| sracipeCircuit<- {sRACIPE} | R Documentation |
Initialize the circuit from a topology file
or a data.frame
A typical topology file looks like
| Source | Target | Type |
| geneA | geneB | 2 |
| geneB | geneC | 1 |
| geneB | geneA | 2 |
Here the regulation type is specified by number - activation: 1,
inhibition: 2
sracipeCircuit(.object) <- value ## S4 replacement method for signature 'RacipeSE' sracipeCircuit(.object) <- value
.object |
RacipeSE object |
value |
data.frame containing the circuit information |
data.frame
sracipeSimulate, sracipeKnockDown,
sracipeOverExp, sracipePlotData
RacipeSet <- RacipeSE()
data("demoCircuit")
sracipeCircuit(RacipeSet) <- demoCircuit
sracipeCircuit(RacipeSet)
rm(RacipeSet, demoCircuit)