ae075240be742c0969aad9c94e6a5e31 *CITATION
70f6ed2077c04a926707f15a60f37ca5 *DESCRIPTION
83e32a02102bd5db99b1abe76e72e452 *INDEX
77ef8b2ccc55bfb7d0138fa56c8a6e3b *Meta/Rd.rds
54e6f1de12beaf88b9dbe0b0a50a1887 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
59bbf946a4425590e3ac6f75a692fb22 *Meta/hsearch.rds
525c1e9c7126f314ec3bdeefca3137b0 *Meta/links.rds
4ca552dc88b6c9f0f47845485d082ed6 *Meta/nsInfo.rds
6c352ad7041637dcbdaf813ab2db2e57 *Meta/package.rds
8c8bc78193de9b10707f8dc3f2ac039c *Meta/vignette.rds
e252bd722268a57cd6ebc4065b35b52b *NAMESPACE
88799e12a0bcb0bfc36b476bcb5951ad *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/rTRM
3845d5f7cff39c617db440c830bf76db *R/rTRM.rdb
ffd136b0c3bf09ce49c146e5e3de7c12 *R/rTRM.rdx
39cf1ac4f3cf9c8cc4705db309db9578 *data/biogrid_hs.rda
ad0a8c78b1877871d539d9de7f700ea3 *data/biogrid_mm.rda
f246fde7976b255f72367afee71bf9d9 *data/datalist
2bd1f5b9fc49bd5ba9911be8dd79973a *db/database.db
3c90d8c315cde66b14a4f346f33a7a85 *doc/index.html
c8315ed8a0930da62df1f875d02c3118 *doc/rTRM_Introduction.R
10e871217ea32f1b3b025655c7337042 *doc/rTRM_Introduction.Rnw
d71c82e7f59caa3c1c6782b40dec8119 *doc/rTRM_Introduction.pdf
98b9ba03259ae6d5fc4516e7a658a10a *extra/ESC-expressed.txt
f658dbb8940b92bfdafc3dcf2cdb698f *extra/ESC_Sox2_peaks.txt
fbb496fd5991c64b1437c46008ae2c4a *extra/example.rda
ef10b0ee264bece1a4bc5de1d57d5102 *extra/pwm_mm_logn.rda
437a3b466c73481572d3acda987eacef *extra/sox2_enr.rda
8bf034224b0f19bbbb6cb98c90e979af *extra/sox2_motif_list.rda
380492bb98fe9ecd48241bc9ab42771c *extra/test.R
4fd5f8a7026274a26f8077d8a56011be *help/AnIndex
64c5ea1ea5c0c36158a13412f72976e2 *help/aliases.rds
c7e48bc184ea2f5e08315cc0defde8b8 *help/paths.rds
a7512e68f146bdae71c4a17239ffbe8a *help/rTRM.rdb
091dbe92d5ec33ebd8033ee4e0cd63ec *help/rTRM.rdx
09d2c68aadd51ab73c829066f69a8ee9 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7ea14546247f74d600415fdb662f3097 *html/annotateFreq.html
cec61bdb712ea2bd208f7608bb7913b8 *html/annotateModule.html
b094fb1c7c9d2839cf7d8afe30d53a16 *html/annotateTRM.html
67b078fed6397bc46e68d5a34eb7c111 *html/biogrid_hs.html
29650f3b80c5c81381e5c24f8736b8e4 *html/biogrid_mm.html
52edec211989f4b7f05faf270464a031 *html/findTRM.html
34a1d498432f65a61a15a9062704109a *html/getAnnotations.html
1b0534aa5050215049149e504139634f *html/getBiogridData.html
62321b505375d6d51331bc1b3fb40da3 *html/getConcentricList.html
de6061f387452810f4bfe10e6c25dfd3 *html/getLargestComp.html
df165878f2302242b0a3f9b3ca693ba4 *html/getMaps.html
13482c7fec81f3583854b7e48015e758 *html/getMatrices.html
6953fb4053df3a85a3827f8c3ccbc238 *html/getMotifsFromEntrezgene.html
cac3a8c43bd0fbda68476881124cd219 *html/getMotifsFromSymbol.html
dc1f3af2026703ddecafcff67aeea41d *html/getOrthologFromMatrix.html
82a3f7c359ceacf0754ea9f751c88752 *html/getOrthologs.html
8be30b4f782188058d96e55bb5dae5a1 *html/getOrthologsFromBiomart.html
ac2fb28e0ad75bb2f4d858b02b4a7774 *html/getSequencesFromGenome.html
149362780ff38e984988f36fbdeb8811 *html/getSimilarityMatrix.html
4ce6a7e3a689b4b595318fd2c1f3458a *html/getTFclass.html
dea0fecc46b77150582b3845dc6c1c4c *html/getTFclassFromEntrezgene.html
41e3e4d6faf7ab80f0b69211fefe8077 *html/getTFterms.html
821782d0f2d9322034df6abe460aa6d4 *html/initBiomart.html
4a8fee41d51d261c6edaeff37c46f62d *html/layout.arc.html
1474bc0da7a1f67e0c93ea7ca7b2c240 *html/layout.concentric.html
18430ec64c15c715c203f6629e1d06d3 *html/plotDegree.html
7ddf41aaaade61a7b4852e2d57972295 *html/plotGraph.html
fe878f2d6fb790fba78a8aae0b8144ec *html/plotTRM.html
051cfa55f03526a6d476c1019d9c8e1b *html/plotTRMlegend.html
0d87de04eb1058baad6755994615b990 *html/processBiogrid.html
cf5e2c7d3911f034a5a8fe9efaafedd6 *html/rTRM-package.html
b851278804c4bc93d00a29f8c7d3ff04 *html/removeVertices.html
6a1b0c61125a4fc94bdf0c911b6ce7ce *html/writeTRMreport.html
f41c2ce67d4c05dd947ee755befef8e9 *unitTests/test_findTRM.R
