5d1480a1ed87589765e31fc39bdc60d2 *CITATION
b6658338a6805d4ae1ed79a25028ec7b *DESCRIPTION
5aa322d25948c7a1f01eef0bb55f0822 *INDEX
25809fd007505b14498cd823ea822d16 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
5d66d38834bf998ef77f5264bcf02745 *Meta/hsearch.rds
d0abbfa1f4b66dba52efcfc254d34848 *Meta/links.rds
d95cea800fce357ed40e97776d75e830 *Meta/nsInfo.rds
eee691da453e96e03f6672d74d6593a7 *Meta/package.rds
55f5dbdd83aec9a191ae5c4b7a69ad6d *Meta/vignette.rds
3723122c751a12180441c5026118876a *NAMESPACE
ad2526eb4d4bcabb6fc4b978e146d97a *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/paxtoolsr
14b92efcc2ee797b1595f596b60575d2 *R/paxtoolsr.rdb
dd4c55986706b4ac7909aaca7ad5b464 *R/paxtoolsr.rdx
6d04e35e1764075bf908f2d025c220e4 *doc/index.html
925ed8fdd8b886f23a2cb43031504e6b *doc/using_paxtoolsr.R
c4d03ddea5f82fff3813233d12ec9070 *doc/using_paxtoolsr.Rmd
82bcc45e28888867d9a6e8034beacedf *doc/using_paxtoolsr.html
57094ba294cbb6fd68b5e557da2bad9b *extdata/10523676-compact.xml
54ab0ba22a9a4c822d8e575990c07331 *extdata/REACT_12034-3.owl
befab228b4b455dad710c9e1580e3fb1 *extdata/biopax3-short-metabolic-pathway.owl
2b5dfeb2ea9bfec99bd6dc4aba646b89 *extdata/dna_replication.owl
0023a3039a2f2658bb8c7885077cbbd5 *extdata/pathways.txt.gz
5a160fa41a75c7c756c2f727535d9d08 *extdata/raf_map_kinase_cascade_reactome.owl
d9802077f40d32d53da69dbbc116d215 *extdata/sif_color_code.txt
7ee52a8e1359ac99e0638777b1e0039e *extdata/tca_cycle.sif
befab228b4b455dad710c9e1580e3fb1 *extdata/test_biopax.owl
360e4ae65db08fb3a419806d3947666b *extdata/test_edgelist.txt
720f4a025c3d8906980885ca1ab33f8b *extdata/test_gsea.gmt
c93c59f7bd8a7d4aafcee2da89ace6f5 *extdata/test_gsea_1.gmt
01d9c9d6de8696250b58d6181392250e *extdata/test_sbgn.xml
7ee52a8e1359ac99e0638777b1e0039e *extdata/test_sif.txt
55bd7efeea626b96b3f332fc3e58d89f *extdata/test_sif_shortestPath.txt
a91fd992f44498a410ba6fb4af7496d0 *extdata/test_sifnx.txt
d4a9f3016f63dd1bddb9cce026810563 *extdata/test_sifnx2.txt
3e2b04768807dcec38b24914ebe7640c *extdata/test_sifnx_250.txt
42d032414c1a6fdeea0fb9e1719d6b6f *extdata/test_sifnx_sm.txt
4f122bc4d29b457e781ab7beaef257b7 *help/AnIndex
9a6ce11b3838002a47e9f900b6ebffae *help/aliases.rds
445032a66f6723ad1f8b6054992fcff5 *help/paths.rds
bc22b07e48db0dba2125b4526cb342b2 *help/paxtoolsr.rdb
ffa2adf7bcc8219205339c1110e822a7 *help/paxtoolsr.rdx
2b2125f2a993c94815b10e38fe65d33e *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a4ba7c08b271a636f3c5e33f9c17cd49 *html/addAttributeList.html
f4c82fd849bc2f22afeb6cf9ebcee42b *html/convertDataFrameListsToVectors.html
67c43e417d653b1faf9ef7bf611f87e7 *html/convertIds.html
9e5fd96f05206c7e98b4d1143edc0170 *html/convertSifToGmt.html
8bb292fb1e8df8da61e46f722b68f115 *html/downloadFile.html
c6a85ad59b4864cc51d1309b6040970d *html/downloadPc2.html
ebf8dd3af10396ea11800dd3cec6e94a *html/downloadSignedPC.html
577f24d6bf8e0e5aad1af6f5ee534479 *html/fetch.html
e5374c8fb5183bc59e1d6e9b77025494 *html/filterSif.html
d2976f3f6869e59d1406eab1968965dc *html/getCacheFiles.html
47fa15b2b1f3a8229d694371a5e698f9 *html/getErrorMessage.html
28a028e6e489dcd66e1135e5ae7e2f53 *html/getNeighbors.html
f8864d2273f06b12a7a64ddef0069b48 *html/getPc.html
d4741f574d5637e3906a5e1aece122b8 *html/getPcDatabaseNames.html
cb7a25a1ad69d7c3d8c6827d525d027d *html/getPcUrl.html
641e8d28630a8d9e2b10dd32d7fe0d04 *html/getShortestPathSif.html
aadb39cb5cb381a70c2612fb1e8c26b7 *html/getSifInteractionCategories.html
377c947a6c6ff6ac5dec6c57255e7248 *html/graphPc.html
95ffe8fad71bf2914d8efdf01bf5831f *html/integrateBiopax.html
b8cb475792e0a8c879969417b01f9c50 *html/loadSifInIgraph.html
adb33b68e52bec4b6e82f0f7c0f32def *html/mapAttributes.html
1be08aea0da671c7ff17e3030064b275 *html/mapValues.html
0e141bd53021705508636c38fe43e1a4 *html/mergeBiopax.html
b89fc76e3774e4e11812687c8cf9726c *html/pcDirections.html
05f3d8395b26888693779bf84bef336f *html/pcFormats.html
f1239ff20d6a3cd34550353f672993f3 *html/pcGraphQueries.html
71494615ae254b3de9fdca8ab4843e27 *html/processPcRequest.html
96b7cf47e528592c8914d759ad3699b8 *html/readBiopax.html
d54a06e37a438779227c12ede4fb8e96 *html/readGmt.html
babd728455201768ccb2793386364e82 *html/readPcPathwaysInfo.html
c5846364fe4709a4dbf80d9c1ec51ed2 *html/readSbgn.html
0035ec55e1260b2825558000740a318b *html/readSif.html
fb1a627fab0fcf7a763a49401a3d40bf *html/readSifnx.html
5fb241742e81fe4d1901df4282f787f5 *html/searchListOfVectors.html
04c6cacf888a2c67a021658b430622d4 *html/searchPc.html
59d5b8501063b7658dcfc67bf8d1ba51 *html/splitSifnxByPathway.html
b777f6f805422e8092bb4e2659f1aace *html/summarize.html
aafba527cccfa562b7b398b91c0d0741 *html/summarizeSif.html
ebabab18692104305021b152e569b6fe *html/toCytoscape.html
e0407150dc0d5a6e2feb14cbd73546f6 *html/toGSEA.html
bbb19d2a367d7a473ddb53043f662418 *html/toLevel3.html
122313282584ebebd7f8612dd44ef0a2 *html/toSBGN.html
477f7bf4c6c4cf84b319531d83cfd537 *html/toSif.html
a69492af91902d1f864a5bd45c0d5d0a *html/toSifnx.html
268f08986ab5deae606a0610e070d6c2 *html/topPathways.html
93d43baf52a757d7d5ebc82ecc9f3095 *html/traverse.html
c0d653da99e9141bb55e8101d4f00e8b *html/validate.html
10b770f4bf107c3605328e762b505f57 *ignore/convertSifnxIds.R
ed2e681553db936079aa21796b1d0a89 *ignore/convertToDF.R
daaee6df65df384e7168e8c0577eceb5 *ignore/convertToDT.R
fb5b7f7caef5743309a18afbc9b3a2ad *ignore/convertToDataFrameWithListOfVectors.R
33ea73ea94104e9e72ec060d2470d216 *ignore/del.txt
11a9c3f3e62bbb6f2385c98b78e3b469 *ignore/extractIds.R
0477d290cc88cb8983762f205f7f9ee0 *ignore/readSifnxSmall.R
7b853239982cd3f311b6bbb57e4fd28e *java/paxtools-4.3.1.jar
32810134c877218a48464ea8a46488eb *paxtoolsNotes.txt
