subnetwork {pandaR} | R Documentation

## Subnetwork

### Description

subnetwork gets a bipartite network containing only the transcription factors or genes and their respective connections

### Usage

    subnetwork(x, nodes, subTf = TRUE)

### Arguments

`x` | an object of class "panda"
`nodes` | character vector containing the transcription factor or gene labels to subset
`subTf` | an optional logical indicating whether to subset by transcription factor. Default is TRUE.

### Value

An matrix describing the subsetted bipartite network.

### Examples

    data(pandaToyData)
    pandaRes <- panda(pandaToyData$motif,
               pandaToyData$expression,pandaToyData$ppi,hamming=.001,progress=TRUE)
    topPandaRes <- topedges(pandaRes,1000)
    subnet.pandaRes <- subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))

    data(pandaResult)
    topPandaRes <- topedges(pandaResult,1000)
    subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))

[Package pandaR version 1.18.0 Index]