plotGraph {pandaR} | R Documentation

## Plot graph

### Description

plotGraph plots a bipartite graph

### Usage

    plotGraph(x)

### Arguments

`x` | an object of class "panda"

### Value

An matrix describing the subsetted bipartite network.

### Examples

    data(pandaToyData)
    pandaRes <- panda(pandaToyData$motif,
               pandaToyData$expression,pandaToyData$ppi,hamming=.001,progress=TRUE)
    topPandaRes <- topedges(pandaRes,1000)
    subnet.pandaRes <- subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))
    plotGraph(subnet.pandaRes)

    data(pandaResult)
    topPandaRes <- topedges(pandaResult, 1000)
    subnet.pandaRes <- subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))
    plotGraph(subnet.pandaRes)

[Package pandaR version 1.18.0 Index]