plotZbyTF {pandaR} | R Documentation

## Plot Z by TF out-degree quantiles

### Description

Generates a Z-score scatterplot for edges according to the TF outdegree in prior. The two PANDA objects should only differ in the gene expression used for the network constructions or other parameters.

### Usage

    plotZbyTF(x, y, motif, hasPrior = TRUE, cuts = 1, cols = 2)

### Arguments

`x` | PANDA object - output of the `panda` function.
`y` | PANDA object - second PANDA object.
`motif` | Motif used to construct the networks.
`hasPrior` | TRUE/FALSE, If TRUE plots the edges that are given a weight > 0 in the motif, else plot those given a weight of 0
`cuts` | either a numeric vector of two or more unique cut points or a single number (greater than or equal to 2) giving the number of intervals into which 'x' is to be cut.
`cols` | Number of columns in layout.

### Value

ggplot heatmapfor each TF, get outdegree in regulatory prior

### Examples

    data(pandaResult)
    data(pandaToyData)
    plotZbyTF(pandaResult,pandaResult, pandaToyData$motif, hasPrior=TRUE)
    plotZbyTF(pandaResult,pandaResult, pandaToyData$motif, cuts=2)

[Package pandaR version 1.18.0 Index]