app                     Processed scRNAseq from pooled CRISPR screens
bootstrap               Bootstrap.
clustNEM                Cluster NEM.
createApp               Creating app data.
fitacc                  Simulation accuracy.
fuzzyindex              Calculate fuzzy ground truth.
getAffinity             Calculate responsibilities.
getIC                   Calculate negative penalized log likelihood.
hamSim                  Accuracy for two phis.
mnem                    Mixture NEMs - main function.
mnemh                   Hierarchical mixture.
mnemk                   Learn the number of components K and optimize
                        the mixture.
plot.bootmnem           Plot bootstrap mnem result.
plot.mnem               Plot mnem result.
plot.mnemsim            Plot simulated mixture.
plotConvergence         Plot convergence of EM
plotDnf                 Plot disjunctive normal form.
simData                 Simulate data.
