Package: miRSM
Type: Package
Title: Inferring miRNA sponge modules by integrating expression data
        and miRNA-target binding information
Version: 1.4.1
Authors@R: 
    person(given = "Junpeng", 
           family = "Zhang", 
           role=c("aut", "cre"), 
           email = "zhangjunpeng_411@yahoo.com")
Description: The package aims to identify miRNA sponge modules by integrating expression data and miRNA-target binding information.
    It provides several functions to study miRNA sponge modules, including popular methods for inferring gene modules 
    (candidate miRNA sponge modules), and a function to identify miRNA sponge modules, as well as several functions to conduct 
    modular analysis of miRNA sponge modules.
Depends: R (>= 3.5.0)
License: GPL-3
URL: https://github.com/zhangjunpeng411/miRSM
Encoding: UTF-8
biocViews: GeneExpression, BiomedicalInformatics, Clustering,
        GeneSetEnrichment, Microarray, Software, GeneRegulation,
        GeneTarget
RoxygenNote: 7.0.2
Imports: WGCNA, flashClust, dynamicTreeCut, GFA, igraph, linkcomm, MCL,
        NMF, biclust, runibic, iBBiG, fabia, BicARE, isa2, s4vd,
        BiBitR, rqubic, Biobase, PMA, stats, dbscan, subspace, mclust,
        SOMbrero, ppclust, miRspongeR, Rcpp, utils,
        SummarizedExperiment, GSEABase, org.Hs.eg.db,
        MatrixCorrelation, energy
Suggests: BiocStyle, knitr, rmarkdown, testthat
VignetteBuilder: knitr
BugReports: https://github.com/zhangjunpeng411/miRSM/issues
git_url: https://git.bioconductor.org/packages/miRSM
git_branch: RELEASE_3_10
git_last_commit: 5441072
git_last_commit_date: 2020-02-01
Date/Publication: 2020-02-02
NeedsCompilation: yes
Packaged: 2020-02-03 05:26:20 UTC; biocbuild
Author: Junpeng Zhang [aut, cre]
Maintainer: Junpeng Zhang <zhangjunpeng_411@yahoo.com>
Built: R 3.6.2; i386-w64-mingw32; 2020-02-03 14:32:38 UTC; windows
Archs: i386, x64
