make.sim.data.tcc {metaseqR} | R Documentation

## Create simulated counts using TCC package

### Description

This function creates simulated RNA-Seq gene expression datasets using the `simulateReadCounts` function from the Bioconductor package TCC and it adds simulated annoation elements. For further information please consult the TCC package documentation.

### Usage

        make.sim.data.tcc(...)

### Arguments

`...` | parameters to the `simulateReadCounts` function.

### Value

A list with the following members: `simdata` holding the simulated dataset complying with metaseqr requirements, and `simparam` holding the simulation parameters (see TCC documentation). Note that the produced data are based in an Arabidopsis dataset.

### Author(s)

Panagiotis Moulos

### Examples

    dd <- make.sim.data.tcc(Ngene=10000,PDEG=0.2,
            DEG.assign=c(0.9,0.1),
            DEG.foldchange=c(5,5),replicates=c(3,3))
    head(dd$simdata)

[Package metaseqR version 1.26.0 Index]