bounds2Rle {genoset} | R Documentation

## Convert bounding indices into a Rle

### Description

Given a matrix of first/last indices, like from boundingIndicesByChr, and values for each range, convert to a Rle. This function takes the expected length of the Rle, n, so that any portion of the full length not covered by a first/last range will be a run with the value NA. This is typical in the case where data is segmented with CBS and some of the data to be segmented is NA.

### Usage

    bounds2Rle(bounds, values, n)

### Arguments

`bounds` | matrix, two columns, with first and last index, like from boundingIndicesByChr
`values` | ANY, some value to be associated with each range, like segmented copy number.
`n` | integer, the expected length of the Rle, i.e. the number of features in the genome/target ranges processed by boundingIndicesByChr.

### Value

Rle

### See Also

Other 'segmented data': `rangeSegMeanLength`, `runCBS`, `segPairTable`, `segTable`, `segs2Granges`, `segs2RleDataFrame`, `segs2Rle`

[Package genoset version 1.42.0 Index]