R: plot Pseudotime density of FSPY

plotPseudotimeDensity {flowSpy}

R Documentation

plot Pseudotime density of FSPY

Description

plot Pseudotime density of FSPY

Usage

plotPseudotimeDensity(
  object,
  color.by = "stage",
  main = "Density of pseudotime",
  adjust = 0.5,
  plot.theme = theme_bw()
)

Arguments

`object`	an FSPY object
`color.by`	character.
`main`	character. Title of the plot
`adjust`	numeric. A multiplicate bandwidth adjustment.
`plot.theme`	themes from `ggplot2`

Value

ggplot2 figure

Examples


if (FALSE) {

plotPseudotimeDensity(fspy)

plotPseudotimeDensity(fspy, adjust = 1)
plotPseudotimeDensity(fspy, adjust = 2)

plotPseudotimeDensity(fspy, adjust = 2) +
  scale_color_manual(values = c("#00599F","#FF3222","#009900",
                                "#FF9933","#FF99FF","#7A06A0"))

}

[Package flowSpy version 1.0.4 Index]