Package: fcScan
Type: Package
Title: fcScan for detecting clusters of coordinates with user defined
        options
Version: 1.0.0
biocViews: GenomeAnnotation, Clustering
Author: Abdallah El-Kurdi <ak161@aub.edu.lb> Ghiwa khalil <gk39@aub.edu.lb> Georges Khazen <gkhazen@lau.edu.lb> Pierre Khoueiry <pk17@aub.edu.lb>
Maintainer: Pierre Khoueiry <pk17@aub.edu.lb> Abdallah El-Kurdi <ak161@aub.edu.lb>
Description: This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.
License: Artistic-2.0
Encoding: UTF-8
Imports: stats, plyr, VariantAnnotation, SummarizedExperiment,
        rtracklayer, GenomicRanges, methods, IRanges
VignetteBuilder: knitr
Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
RoxygenNote: 6.1.0
git_url: https://git.bioconductor.org/packages/fcScan
git_branch: RELEASE_3_10
git_last_commit: 0fbc28e
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: no
Packaged: 2019-10-30 05:03:55 UTC; biocbuild
Built: R 3.6.1; ; 2019-10-30 13:12:41 UTC; windows
