Package: easyRNASeq
Version: 2.22.0
Date: 2019-10-02
Type: Package
Title: Count summarization and normalization for RNA-Seq data
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler
Maintainer: Nicolas Delhomme <nicolas.delhomme@umu.se>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.41.2), BiocFileCache (>= 1.7.10), BiocGenerics
        (>= 0.27.1), BiocParallel (>= 1.15.15), biomaRt (>= 2.37.9),
        Biostrings (>= 2.49.2), DESeq (>= 1.33.0), edgeR (>= 3.23.6),
        GenomeInfoDb (>= 1.17.4), genomeIntervals (>= 1.37.0),
        GenomicAlignments (>= 1.17.3), GenomicRanges (>= 1.33.14),
        SummarizedExperiment (>= 1.15.9), graphics, IRanges (>=
        2.15.18), LSD (>= 4.0), locfit, methods, parallel, rappdirs (>=
        0.3.1), Rsamtools (>= 1.33.7), S4Vectors (>= 0.19.23),
        ShortRead (>= 1.39.0), utils
Suggests: BiocStyle (>= 2.9.6), BSgenome (>= 1.49.5),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
        rmarkdown, RUnit (>= 0.4.32)
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing,
        ImmunoOncology
RoxygenNote: 6.1.1
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/easyRNASeq
git_branch: RELEASE_3_10
git_last_commit: ca050d4
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: no
Packaged: 2019-10-30 02:03:42 UTC; biocbuild
Built: R 3.6.1; ; 2019-10-30 13:08:34 UTC; windows
