f5009b0cc7fcb0b14eec0aada5fb85f0 *CITATION
9b0b760b7743ed0a0444dcbb9e9b1683 *DESCRIPTION
3f2fa3941a2079195ad59f54c120133c *INDEX
028d6fa1631fa16813fa7194496b1d59 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
91e579f4143b2319f3386572cb8cb19a *Meta/hsearch.rds
90e58273b1666f90c9aeb53eec8d1e3d *Meta/links.rds
5d4d8c23f53593066bf723d77460e395 *Meta/nsInfo.rds
62f4951f26122f9384a98ecaa7be9acb *Meta/package.rds
c9653a32d8247b984f260421da174d78 *Meta/vignette.rds
c377af424b4a4a4f18555630c03eb057 *NAMESPACE
79064ed32e48ac2f74536eecf47ef758 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/diffHic
cc8ebbe7ae928fa52634637360d3be90 *R/diffHic.rdb
c0e96c491eb0e849399c398dffe162ea *R/diffHic.rdx
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869d5340f7893fa3c5f132bf776c7600 *exdata/cuts.rds
beece61b4f038a89e2c1e7c01d1602ef *exdata/generator.R
3bc4511ce1aab325d07a2f152d2158f6 *exdata/hic_sort.bam
60c786471d4f676eb5d7f9b56a105bc9 *help/AnIndex
e1289da270cbb318b6c27691598934c3 *help/aliases.rds
378fc8e0d13570eae69eeaa0886dd97f *help/diffHic.rdb
5db3413ff1639156e92ef5bc3b36276a *help/diffHic.rdx
22f5179e91b65454c427a9fd2914b810 *help/paths.rds
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f8a2349497bfb90e28c4b257bdc9b569 *html/DNaseHiC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
0d6d1e661618490b51bdde5521bcb877 *html/annotatePairs.html
97509a3b151563fc4c2f9a968b094091 *html/boxPairs.html
8a15fbf3c816583f95c8b0ea395cc2d3 *html/clusterPairs.html
711040d3b54d535ad05a7eeda8caf308 *html/compartmentalize.html
a1ccbd0294c401c46697f9c48887b4ae *html/connectCounts.html
d744f4caade929bbd8896878495bdd0c *html/consolidatePairs.html
7fed98907a5acd3905330475bec62049 *html/correctedContact.html
e34ac0e910c1f4144149eabe3e1d9078 *html/cutGenome.html
b05f7c2eeb42520ec68c5a320e42bfc5 *html/diClusters.html
68ca22ff10b711363ebccacb3705e8af *html/diffHicUsersGuide.html
a383b85da6cd4b861b687f6903ae2835 *html/domainDirections.html
505bac1bac84b44714f7bc5a91f0c73f *html/enrichedPairs.html
23435bb7dbce8ecd36b52e1a7701844c *html/extractPatch.html
1a8c4ae7a2fa49fb84d6ed49699c9264 *html/filterDiag.html
aa31c0f137df54955fb614bcf938e06f *html/filterPeaks.html
6fdb93631e3ff8dac92c3d7c7364ac93 *html/filters.html
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376e21a86ea9e5e211db982b09bc51e7 *html/getPairData.html
9fdba546669cdf6791a2b0cfd00aaefb *html/loadData.html
87fc99d5329fb9735a5d9c4cf65ddd1f *html/marginCounts.html
17a20e7a07a839d7ccf963b77bf12237 *html/mergeCMs.html
149dc64b60bab21af80ee45260326eb5 *html/mergePairs.html
31c7dd9c6cc14e9d55468af9075577f1 *html/neighborCounts.html
7f01435aa43a9eba9d7b4bad2d0ee13e *html/normalizeCNV.html
5a6cb38e21b8ac67020b33b3c942e802 *html/pairParam.html
f9326ab42e3a6f2f8b6494679fa25788 *html/plotDI.html
080ff09bd08d32939ec987ced0ee5736 *html/plotPlaid.html
35ac42cb0d55e35bbe644466947de8a3 *html/preparePairs.html
e43b87b5c43a929d63efe3e138a85404 *html/prunePairs.html
59d0c2913999c71f3500b81de65e54f2 *html/readMTX2IntSet.html
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cf78094935319ecec0aa00b13d13bfd4 *html/squareCounts.html
cf4c08d31839e2b309dfd7f0f6ba3aee *html/totalCounts.html
e500a53cb6cc1d02deaf3a0ff5a8a5fc *libs/i386/diffHic.dll
be2c2175e0f3e53b1075cc0642b7cdb0 *libs/x64/diffHic.dll
2e668d0500a9863b1cadfcc1063891a0 *python/iter_map.py
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c7902ad6c0e56849a55ba3f34b2b54b1 *tests/run_all_tests.sh
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3a2f6bb068c66c4eeabf10287512f7cb *tests/simsam.R
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1d367309cec8b40f9cc21be093f88432 *tests/test-margin.Rout.save
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7dda21c95cd1f42a0fa7689803a19c56 *tests/test-neighbor.Rout.save
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31027a67d617e66f3c2c2677d47f14fd *tests/test-pair-manip.Rout.save
f6cb88db2ac54f5f3fa946dec83025bc *tests/test-patch.R
9cc9b3f3f603a90a71f7f97e7c4e0a2f *tests/test-patch.Rout.save
52af1d2fd21f17a8d46b6f1552cfafa8 *tests/test-prune.R
5c86d72a6d35f0c4b844ade844837ed3 *tests/test-prune.Rout.save
