97d1cb27e8478d7ae4de59a2de8c86e7 *CITATION
2cf3e49aeaf53033dd6facf1cac7371e *DESCRIPTION
82aad66b16517c9991aa8cae64982337 *INDEX
7a048888d17b6118a7c5fbf80ba1cb23 *Meta/Rd.rds
b6bccee84145f24ca57c493b79607834 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
cbe9a97ff0e4a97b015d85e49fd346a3 *Meta/hsearch.rds
83b0733bd52daef6c8b929ae6cabc2c1 *Meta/links.rds
29a4a82f0881d0e6b4934aeb924ac4d0 *Meta/nsInfo.rds
1a3df838690d896097f96a86e2886cb9 *Meta/package.rds
abc8548a5aeec1ba1dc004d078dd6d0b *Meta/vignette.rds
e096c80e50b90520bbd9b8ac19805a4c *NAMESPACE
8ada7993428fbe4013f2164a0f29f319 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/deepSNV
f95d23c53d2bf921471e92a40f766982 *R/deepSNV.rdb
d5648414399f160977e6ad8c4f483f2e *R/deepSNV.rdx
eb93e43e868cf6b00523766e2093961c *TODO
3ccecc236923abcec5bf3979f95058ec *data/HIVmix.RData
e5e59d311d41716d436bda6c12d6b6f8 *data/RCC.RData
44fe941582b98ed2fb74a2ff43bd04dc *data/counts.RData
8f473e99da6aea7893fbf4f0967161a5 *data/phiX.RData
39946182d2a7087db51be00e27bfe68e *data/pi.RData
a198b59b439c25594d85e0f8c8afc300 *data/trueSNVs.RData
b668e30fc1bc1b8c1f60ad1dbaff8772 *doc/deepSNV.R
79ea907278cca8011a87b7954bfc02ce *doc/deepSNV.Rnw
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92e9aece07ac3612437ffc3be5c5823f *doc/shearwater.R
fc4e56aed626edbec5e35a7c0ac725b0 *doc/shearwater.Rnw
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05a586a89e9f687393bba927604f57c0 *doc/shearwaterML.R
866271256074ead132c1e1225b663bac *doc/shearwaterML.Rmd
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03adcf464008b8e2642cdb62807764d3 *example/deepSNV-example.R
f3dd841413d42161102b4b371b8b8e8f *example/shearwater-example.R
62e3352bca95588f9d1478ae36f1ed83 *extdata/control.bam
a3507164d703e922651e0e56236bc293 *extdata/control.bam.bai
89aadac87ae16155e52a1d89289428ae *extdata/deepSNV.vcf
965814f871f749638f925cc6f77d2a38 *extdata/shearwater.vcf
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6af3a3077f6d4ab936e1bb777ad8e910 *extdata/test.bam
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2df1a587bda6e4c60cc283dfd468cbaa *help/AnIndex
e0d5618c05a3ceeeee4365c004e1045a *help/aliases.rds
46fc14232b35712f9478e16a75d912a0 *help/deepSNV.rdb
c70ad2ada14987f4f751790bd6ad1907 *help/deepSNV.rdx
ad0bfab9f478ceaa1fe963a8b78835c7 *help/paths.rds
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cacc9e6494c618de4559e50b546f6a1f *html/Extract-methods.html
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b0a5ae4dda7d8db11f8cf0474067f48e *html/RCC.html
06797faa02c0a608eab0da15dae557ac *html/RF.html
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18b922096fdf0ca8ec738d0d3d733fa0 *html/bf2Vcf.html
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a6ae88ba4a347e8a02e79fac144884ca *html/coordinates-methods.html
15bb6ae07507eb08942d1649b1cf84e0 *html/counts.html
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641bf9e28eddaae45e9f960d5fbb48bc *html/deepSNV-class.html
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7ad104e1ec9c53a0fb25b01ba485d4bc *html/estimateDirichlet-methods.html
797795c584adeb29f5749027009e8e4d *html/estimateDispersion-methods.html
32efa82019ffec3870a8737da6e5f977 *html/estimateRho.html
f54b95e2667654067c3f822f6c6aae5a *html/loadAllData.html
5193e19c66297ae2a553a648ca206c22 *html/makePrior.html
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cb8ba901b22288241645c03e28fa893d *html/mcChunk.html
7a6549e7e0152305fe73f88244bca4c8 *html/normalize-methods.html
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8ea82e315608a1e59bba3edf5602e10b *html/phiX.html
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a183d4eacfea1a66e15ca83402806198 *html/plot.deepSNV.html
6e8d6a8906b0c08cddeae309ead937a0 *html/qvals2Vcf.html
d96f258372a3cf2697b839c307d985c4 *html/repeatMask-methods.html
ad8cd9029feb11c9ca4670a874f1f7c6 *html/shearwater.html
9fac480b3b3cd18c17ccdafcff7cc346 *html/show-deepSNV-method.html
d0fc8fb0c92ee03fb8e8db87775ae7f4 *html/summary-methods.html
5b12b1505fe5059887e64235f8b55e05 *html/test-methods.html
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c626e5365e6d8efe6ca50d69fc598ab1 *libs/x64/deepSNV.dll
