076c5e155ef485acd191dabe35b93740 *DESCRIPTION
d78c5d38d1d0e96ee757127e580123bc *INDEX
d156c87a81089b9cf7d09021456918b4 *Meta/Rd.rds
989edc50dffd590a54c8c2ab86576cf9 *Meta/features.rds
09550f2abcfa9494c8bd621d12a5dd6c *Meta/hsearch.rds
8677ab4527747348aec589463585b368 *Meta/links.rds
168242194850470006e3594a61e3920f *Meta/nsInfo.rds
b7764f7eab1dad803f3929f53bb4a468 *Meta/package.rds
4ed0b22389869e6af05fb1292a4784c2 *Meta/vignette.rds
fa56a6c952783323ea5ce5eef54c3da9 *NAMESPACE
1190f0067d9f6f418561103ab85649b1 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/chimeraviz
e2893d1f50fc2fbffc15e1250996efde *R/chimeraviz.rdb
43eb47d94e1fde42d0179f1064a391d2 *R/chimeraviz.rdx
64ff4638b09c4d5924e767627b561e35 *doc/chimeraviz-vignette.R
bb67c5ee09f2402d40410a309362c7ba *doc/chimeraviz-vignette.Rmd
cdc9af3e7bc61bf871f0676c8bff3e13 *doc/chimeraviz-vignette.html
87d398aac603b39a8f07ee1f6126a57e *doc/index.html
e55e5dc836b4a3c695466425e1689137 *extdata/5267readsAligned.bam
37aeebb5c0e07f7cfea95ac632976e10 *extdata/5267readsAligned.bam.bai
7d39659a8e5980c647c14be7e8fe6446 *extdata/FusionMap_01_TestDataset_InputFastq.FusionReport.txt
bc36f846c1243a084ac74575bd836a3c *extdata/Homo_sapiens.GRCh37.74.sqlite
2eb13512a6bb23a08344a56afcf4c9eb *extdata/Homo_sapiens.GRCh37.74_subset.gtf
98c1fef7418b85ba2c6ca4653e15d9e1 *extdata/PRADA.acc.fusion.fq.TAF.tsv
118273b4f2bc3f2dec632852c16fda24 *extdata/UCSC.HG19.Human.CytoBandIdeogram.txt
53cf28ef40aa9bf992e1eea59a1add7a *extdata/UCSC.HG38.Human.CytoBandIdeogram.txt
ea201cb1b403b72eb9a192a17486c457 *extdata/UCSC.MM10.Mus.musculus.CytoBandIdeogram.txt
0c88fb7fa76f5fcd28adfcf98e5c8a48 *extdata/defuse_833ke_results.filtered.tsv
050fb11bdb93ccd095dd5d6dbb0b3de2 *extdata/ericscript_SRR1657556.results.total.tsv
aedb9f9c55a5fa1746b08d2a778a3c72 *extdata/fusion5267and11759reads.bam
c1ed782433e7c6afbafcbf4532e5d9bc *extdata/fusion5267and11759reads.bam.bai
039db2abb9f0c27f14bc9cd839768ecb *extdata/fusion5267and11759reads.bedGraph
46ccf436289046497a9a3745971eb901 *extdata/fusioncatcher_833ke_final-list-candidate-fusion-genes.txt
1f4708fff839b2eb84e8784ba0dc2b6a *extdata/infusion_fusions.txt
415821637bb1d4c561eb8d59b12eb881 *extdata/jaffa_results.csv
0ef6610c2cf156419a99177f3e7d2105 *extdata/oncofuse.outfile
fd2918ff0eb3640a0577771fdce265db *extdata/protein_domains_5267.bed
65deac6da91d91956a391190723b80bc *extdata/reads.1.fq
1b3aad03ac2f8905867f365d783275c8 *extdata/reads.2.fq
51787d42de4ee1aebbe6e868ad13e0bf *extdata/reads_supporting_defuse_fusion_5267.1.fq
418250789cf47ad6c665b79c5492fde9 *extdata/reads_supporting_defuse_fusion_5267.2.fq
15a6e8fe67d523b82867398e87ef33d0 *extdata/soapfuse_833ke_final.Fusion.specific.for.genes
e15004a2c6a27ac6c5daa39a1f9fb9cb *extdata/star-fusion.fusion_candidates.final.abridged.txt
2c02a05453ff214b2942bf2f8c8ae9e5 *help/AnIndex
775b1839c331c0b2e06b367ab0b59807 *help/aliases.rds
4b3d7933cbea155030447be6e609abed *help/chimeraviz.rdb
dca8426740bf69154b687db8041eb8c9 *help/chimeraviz.rdx
d533c4b0002cce08d239889c4fae641f *help/paths.rds
f759d4254e096d3f9a10c8ebfe339180 *html/00Index.html
918e27b126d7f7464d68572837c902f1 *html/Fusion-class.html
c6cbc243837e2d892858d5c1078c7564 *html/PartnerGene-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
72e411cdc86be6c39a7e2d82fbfaf04a *html/add_fusion_reads_alignment.html
f3560fe562da117c0ffc4c2ff5936601 *html/chimeraviz-internals-fusions_to_gene_label_data.html
b3f6eefa6fbecdecd8aa5f7bd696d7af *html/chimeraviz-internals-fusions_to_link_data.html
b150d636f42449bb6d4ab9db99ef303e *html/chimeraviz-internals-scaleListToInterval.html
deb0ebca6991fa6d14e75de761da1bbc *html/chimeraviz.html
1402492014207f15eba99f8510e5d6d1 *html/create_fusion_report.html
a96646c70753be3d82caf112a989ee6a *html/decide_transcript_category.html
170b5e6c3c2b184e683f2bda5970143e *html/down_shift.html
cf1056e2b6d1abae58bc4e7c0251e85a *html/downstream_partner_gene.html
03c374c76971773ae49209e373ed2817 *html/fetch_reads_from_fastq.html
3f0807894e0b1a19bac19faae83bcc28 *html/fusion_spanning_reads_count.html
5bd68711c1c75180c38090653f19c211 *html/fusion_split_reads_count.html
0aab733d0a2895597d06a49bb533d781 *html/fusion_to_data_frame.html
c76934652cc96db8de3508eec79258e6 *html/get_ensembl_ids.html
599d75ab6898b0bb343df2340e010ed6 *html/get_fusion_by_chromosome.html
5a89c1ea66661339a91f8cd67e8c1d17 *html/get_fusion_by_gene_name.html
dabe8219e6233fde59d25ba5074c28fa *html/get_fusion_by_id.html
7c9e06b43ab2dfc1ae14063b9d67e294 *html/get_transcripts_ensembl_db.html
615a2c2afa1c92475e8092c19c134775 *html/import_defuse.html
6e4973bd33413ffc1888c8c0e110396f *html/import_ericscript.html
414635f7cd380ac2639fae326e9136d4 *html/import_function_non_ucsc.html
a040ab96d105b7ee14771da4613ce9cd *html/import_fusioncatcher.html
340eac9233940173a743383755070d78 *html/import_fusionmap.html
beb546f7583f85c87aa559ea2b53cf51 *html/import_infusion.html
f5c357b8ddb695be4e1c57110cf353f2 *html/import_jaffa.html
7d6182ea9ad31012516ce2dc8bd02b60 *html/import_oncofuse.html
57f6527696332d1c18f540bd58f9a85e *html/import_prada.html
33e32ee2e084e7d07fb2fc79e3e62c2f *html/import_soapfuse.html
d4a35a325048b4f5ebe4449523e6f51f *html/import_starfusion.html
a25a60445ea1706f42f91e0eb81245ec *html/partner_gene_ensembl_id.html
a4ed5f2e2487b2347439e78733411c94 *html/partner_gene_junction_sequence.html
b8c5bd8ade675be22f1b028abca66000 *html/plot_circle.html
16d896b3770c840e9d3bad0d3be03969 *html/plot_fusion.html
b7fbe83ee801f6117b5265a9d4f653c3 *html/plot_fusion_reads.html
85d56030faf020f4364e076759b85cba *html/plot_fusion_transcript.html
f52e213f89051e0dd39d5e22642c019a *html/plot_fusion_transcript_with_protein_domain.html
30812bcd06e4bb537d5a6b64fe35c10c *html/plot_fusion_transcripts_graph.html
3dc83d9ded1188ba66ed22b6bfe74c7f *html/plot_transcripts.html
6819712aca148d8865ff1b7a02349ffe *html/raw_Homo_sapiens.GRCh37.74.html
e7ec6b9adabf6d03bff153228941f2ce *html/raw_cytobandhg19.html
f56290c9a21d5a6e8ee11a2e321057fd *html/raw_cytobandhg38.html
feb7c2bcfd6c271c6bc823ee72d0f358 *html/raw_defuse.html
dd3a78bba25ab30d9d7ad73a1fd77043 *html/raw_ericscript.html
c9bf5e7ec070348f5ec70a4ecd5bbad9 *html/raw_fusion5267proteindomains.html
98ac640e37a62893af9f6334ff6bd901 *html/raw_fusion5267reads.html
ae2a0c7e638a845512fe057f7fc0eb65 *html/raw_fusion5267readsBedGraph.html
69deb58de50b3321e2f77430ee4de071 *html/raw_fusioncatcher.html
f6df3fe949ff74b995307fe688744116 *html/raw_fusionmap.html
4090311ee753a74dcfd3f2cefcfd4ea9 *html/raw_infusion.html
54a5e62d779380f724af49163cffcddf *html/raw_jaffa.html
b9eb86e03aaf2d7dff5835fcd508562a *html/raw_oncofuse.html
3997b0708b741d5c776ee8a24f23e219 *html/raw_prada.html
6c375035ef96f720512126d6709efb5e *html/raw_soapfuse.html
b2c8601b005fa7fb34a0314cd1d55aa7 *html/raw_starfusion.html
028db85501c701758e9c99662e661fc6 *html/select_transcript.html
f2a9797246334153431db429afdc946d *html/show-Fusion-method.html
1b82bf32346c05207d56bd5a8103993b *html/show-PartnerGene-method.html
936afd9d59a6710465d956563a3ea900 *html/split_on_utr_and_add_feature.html
fc723c60e6d05f5f53109d03c66f3373 *html/upstream_partner_gene.html
6bf498579ce87fcdf80ebd435d7f34d7 *html/write_fusion_reference.html
15a69578bf401527a8e88625c6995528 *reports/fusionListReport.Rmd
3f2eca679b09cc4d117fd081bc71f989 *scripts/bowtie.R
042bf8796c879f9dd9bac816182c5b2d *scripts/rsubread.R
