readYeastGrower {cellGrowth}R Documentation

Read Yeast Grower data files

Description

Read raw data file from Yeast Grower software

Usage

  readYeastGrower(file)

Arguments

file

filename

Value

a list with entries:

time

a numeric vector of time points

OD

a data.frame vector of measured OD. The colnames are the well names.

read

a numeric vector of read numbers

temperature

a numeric vector of temperatures

header

a character vector: the header of the file

Author(s)

Julien Gagneur

See Also

readGenios

Examples

# Get file names
# Parse file
dat = readYeastGrower( system.file("extdata", "Plate1_YPFruc.txt", package="cellGrowth") )

# fit
n <- names( dat$OD)[36]
fit <- fitCellGrowth(x=dat$time,z=log2(dat$OD[[n]]), model = "locfit")
plot(fit)
[Package cellGrowth version 1.30.0 Index]