27fdc3aee3c348429a12d627d53e856a *DESCRIPTION
e561ee542a6cb31abe3365eaeb3bc1b5 *INDEX
0e873001ff5d9b94dea2a11d11b65484 *Meta/Rd.rds
77e84c4a3f1f81606a038d3db59aa2db *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
8a926fbc53517c1b755b553d76e52f4d *Meta/hsearch.rds
158f4ee60fd0434531407f12f98f477a *Meta/links.rds
a8860466065d550e74e5f38f2c42c75f *Meta/nsInfo.rds
b37380095a6fdc6949392dd51496d16d *Meta/package.rds
888f2cd27f5bf2b6ecb7417f3521c863 *Meta/vignette.rds
1ee7c1e8890b45ebd63ea0d80b3429c1 *NAMESPACE
bc47d2850e23f656faf2c5a08dda002a *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/YAPSA
ad997161d14ed240a6566dabe84ee096 *R/YAPSA.rdb
3ee6d949bffbe51a74662648b44c7718 *R/YAPSA.rdx
70924c96e4f552a8c90c163acf5971b4 *data/cutoffs.rda
8d2217cdfd41dce00bf577b6611d5a0f *data/exchange_colour_vector.rda
a707e6fe0b59a9c3c73c328feb546a42 *data/lymphoma_Nature2013_raw.rda
d494e4cbe6bcc48fb7381ea849d8dd28 *data/lymphoma_PID.rda
a6f15f9ae8e373ce599a44e9073d2eb0 *data/lymphoma_cohort_LCD_results.rda
0a6400a8c40555ef4a3f70081a46416c *data/lymphoma_test.rda
8dd609f861f4d06425a08b8b01a571a6 *data/sigs.rda
d217a29dfe5f4e8e3e3b34761a54df0b *data/targetCapture_cor_factors.rda
2fc6424b026aaa5d9df78c4315d7c19b *doc/YAPSA.R
6fb6d4d89db0d68b55dee629cfa1f308 *doc/YAPSA.Rmd
7013013f371de8ed8f25e2db33e88543 *doc/YAPSA.html
a56ba60a4e2f65cefa2f3627d2d7d669 *doc/index.html
94cbf54f1285c881a4706ab35a9d75d4 *foreign/annotate_vcf.pl
4b10ff9a6424a9a976e69312a1d7ba14 *foreign/kmer_frequencies.pl
f9a24864b07671ed3f57be6d962581db *help/AnIndex
a2a5e8c9c5145ab00888dff59f5bb25c *help/YAPSA.rdb
7f02a05517f27e27d0433390c175952e *help/YAPSA.rdx
143d7cf835d8a93f28930f4c55f39b84 *help/aliases.rds
8e835bcfcb20e565fd907cdb7e8bf630 *help/paths.rds
a8a974e6fbea6e854a8b08164232df8e *html/00Index.html
4700cdb06b2ba4b6ccfc7005aaf57e69 *html/LCD.html
cdb2afe5e68b55944fbfdebc3e075786 *html/LCD_complex_cutoff.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
af5ee4df038fd71a5a8da62a91a2b539 *html/YAPSA.html
e0a28dea73157c24916d2014d10dadd5 *html/add_annotation.html
eea437776e5ece4454f7d46dbc308c93 *html/add_as_fist_to_list.html
9d4237b2671cfca2d57544b67060cb0d *html/aggregate_exposures_by_category.html
500e1255b28c377adbb0f7d1028db144 *html/annotate_intermut_dist_PID.html
c1084f20445155c812724a108bad26ad *html/annotate_intermut_dist_cohort.html
ac38795973acc563189457a0ab5c26dd *html/annotation_exposures_barplot.html
fba7f46fbc0266ed90694642f9cd2724 *html/annotation_heatmap_exposures.html
c1f15b9e51dc47422929cd1e06def7c8 *html/attribute_nucleotide_exchanges.html
2fa489800004ecb0f796bb60a09d8412 *html/build_gene_list_for_pathway.html
25c34cf44e76b772ef4935285cd55669 *html/compare_SMCs.html
9c48ffba3ef30474ddced7bb438a1660 *html/compare_exposures.html
76f536f7a5c4e22361b820992f58aadc *html/compare_sets.html
848096204a3a13ae888a318e175a575f *html/compare_to_catalogues.html
2c961d7c23b33bf51abbef5bac2df0da *html/complex_heatmap_exposures.html
e7b9e3e32fba72fbfebdb634bc34decb *html/compute_comparison_stat_df.html
756132e7d99f41b8106ab7c2c1469637 *html/cosineDist.html
78699dc85cf2c71dcdb7a5ac39359b61 *html/create_mutation_catalogue_from_VR.html
466b0091f27da0808761713ec59ca89e *html/create_mutation_catalogue_from_df.html
7af695ff84138069a56aaed7784a50e2 *html/cut_breaks_as_intervals.html
bf485d15a8da10bbf7af02eafc015447 *html/cutoffs.html
3dbdb3f52d46f546fbc36796d912e301 *html/exampleYAPSA.html
a0e659332ada7122065512f56d7d948e *html/exchange_colour_vector.html
bbc2ffe26aab80ee5802ae58fcb74512 *html/exposures_barplot.html
111f59210604ba7574ad6afaf5da08c0 *html/extract_names_from_gene_list.html
a87728ebd53dc10a2f4c6f15758b5f69 *html/find_affected_PIDs.html
b8d3c20323317c557324ae24fdaf557b *html/get_extreme_PIDs.html
0aea21d00bbeac08af30abded064e3ef *html/hclust_exposures.html
fc11b3c4aef8eb3c8daa088ec9edbb07 *html/makeVRangesFromDataFrame.html
900d470da9b0990de8e01128282e2828 *html/make_catalogue_strata_df.html
845b02f8f7615c1538d90b3467cf4215 *html/make_comparison_matrix.html
a36c9a5c73dd3f3da7aafc6327341c65 *html/make_strata_df.html
bb4fe522f92b7f2cf898c0fc1abd0ecc *html/make_subgroups_df.html
28e59011b568032682c3a8b4dddae442 *html/melt_exposures.html
e10bf7e9e6458f77810d35b1e6736d3a *html/merge_exposures.html
3a3e84945ddc68ab9fea9f3b152d4a6f *html/normalizeMotifs_otherRownames.html
7535ab0b058cd57206c071a47c7d3577 *html/normalize_df_per_dim.html
5c86beccd5f3ce26e6b04e194e78148f *html/plotExchangeSpectra.html
b4154ff15efa7871ca334ceab070a981 *html/plot_SMC.html
81df7ce98baaff8c6f75795163945c9e *html/plot_exposures.html
9d6a73fc652bec484bfe0b62879d044c *html/plot_strata.html
90772766bd7e2baeccf0ab4dbffb9305 *html/repeat_df.html
c5d7b23f09a85c655d365874a103b46b *html/run_SMC.html
b2795820c27b55b60e8c67e7fe9f8c65 *html/run_annotate_vcf_pl.html
b6b113461dc55eae34fa933c817ae171 *html/run_comparison_catalogues.html
52e8354eba5e350898e492c09b01f7cc *html/run_comparison_general.html
a3b820f05c6ef63d571b25b9493e3735 *html/run_kmer_frequency_correction.html
97870361bca40776cf4d5423e737ab0c *html/run_kmer_frequency_normalization.html
1e7c0080a80f0a545c219531ac9333b9 *html/run_plot_strata_general.html
d07c7fef76e2afaa5c68026325f0a241 *html/shapiro_if_possible.html
d14a7cff819c11f85452ad0a6d40b411 *html/sigs.html
4b506be84b711508225df2d404bb61cb *html/split_exposures_by_subgroups.html
136bc2ff5a0ac9ca1bd9dae83a60576a *html/stat_plot_subgroups.html
2ecc3267ce1b257fdfa4ec9f4bad1182 *html/stat_test_SMC.html
1ffff84ef2d8080ef25738963ae900ee *html/stat_test_subgroups.html
cff8fd2f60c43c8430671aa8d33b878b *html/stderrmean.html
e6534c7cccabaa5e7c3eec7e2c206de9 *html/sum_over_list_of_df.html
105c9fe8223aa19be656cbab8798ae77 *html/targetCapture_cor_factors.html
6d46de51cb8fea267b79283bcbb655c7 *html/test_exposureAffected.html
b4d851c60ebb1547e01feb19948a4dcd *html/test_gene_list_in_exposures.html
931f77aac898ae526b559e3a7f98be73 *html/transform_rownames_R_to_MATLAB.html
7cfde97c33b94a0c57f5fb169f09865f *html/translate_to_hg19.html
f8d5f8e7e9c3831096d5dfe3feaf7f0e *html/trellis_rainfall_plot.html
