8df43616e76a68b42a4762c993dc0549 *DESCRIPTION
8bd6afcf8e152dc9999d9066707cc81a *INDEX
f280ea91a3d05098149a92c738f33c48 *Meta/Rd.rds
5bf64b76354c1fafa922a86170a3dc53 *Meta/data.rds
145bf2c78f999791e0c372db36ed6d7a *Meta/features.rds
38e4e6bc25e49c008b83d2467e3f8404 *Meta/hsearch.rds
cc18c9ec6554b2f613a51aa3ff0ec953 *Meta/links.rds
264db863314b0253cf4181b4313a73a2 *Meta/nsInfo.rds
774fde41983d5065b38376c770c3ef38 *Meta/package.rds
02ce210a10f3d2928b21fc4749be7243 *Meta/vignette.rds
f2a560657232b2afbdce094b763648da *NAMESPACE
302eb74005d4628313dd72f235ada0c6 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantTools
a27114f4a5d973ba18894d90b1031705 *R/VariantTools.rdb
8007b6235481dc71f818eb990b8766eb *R/VariantTools.rdx
147b05616262b8b0605ad82917fe8c23 *data/vignette.rda
8d5ddf1aee747bfe9f75ad0ffc3f13e3 *doc/VariantTools.R
b7f9d4a21e2fe40fe4373ba070ec12c4 *doc/VariantTools.Rnw
cef6648d3844a38e6f84a86eae0f31a2 *doc/VariantTools.pdf
e502007f6e906fa8467344cec2f4e1b6 *doc/fig/VariantCallingProcess.pdf
e6a9a9d24613ddbf590543bc5ebeac0d *doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf
0ea34819326314eae4c6b9d5f4ee9dbe *doc/fig/bar-fdr-cov-bin-merged-all.pdf
1c91bbadcef2b6cba06c5d9b328ba192 *doc/fig/bar-fnr-cov-bin-merged-all.pdf
380b2a619aefe23bd017320b0f05540f *doc/fig/boxplot-altFraction.pdf
34a468a845bb92d33e20533d70da349b *doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf
dc08e35af067169253e263d844fbc13f *doc/fig/boxplot-obs-freq-sample-ceu-all.pdf
a6d1a91d902b823ea49e3533087adc3a *doc/fig/density-altFraction.pdf
9081576fb3392c333fa126ad4557c53a *doc/fig/dot-percent-recovered-caller-merged-20-all.pdf
31b854f38096fba1546ecf0124be1101 *doc/fig/errors.pdf
ff7f4e378ea15116c447180c721ed35c *doc/fig/hist-fdr-rep-count-all.pdf
cafe8bda6b95fb9dd48a1f3dcd14fca3 *doc/fig/igv_high_cov_neg.png
72c5d2679455c4913dfc6c684c2839e2 *doc/fig/mix.pdf
5192ba8e79d29bf7c9f7f2008dd7aa98 *doc/fig/post-filters.pdf
c81e6de4687156b4883bdefed5c79edb *doc/fig/variant-calling-filters.pdf
8360dff4ce73e85ebe879d662a8da062 *doc/fig/workflow.pdf
a6d9c0aa068f83ee474249201946c09f *doc/index.html
04f3442396ed48d6be465606e784d7ca *doc/tutorial.org
e18d1dc09c30c968212c5bef7d5dd6da *doc/tutorial.pdf
e372e3b655282fec0a7ca5f149509595 *help/AnIndex
e26bb37e884e212f8316a01c55887096 *help/VariantTools.rdb
1b15ba072cd634234a6df322c62c13e7 *help/VariantTools.rdx
0b041b1a0a7599407c1ca482bc824a73 *help/aliases.rds
f45fb9e0d8f2599eebc8189571bb8fcb *help/paths.rds
719f200eff1e65f8dab19cce23a3576f *html/00Index.html
3795d0a5d372879e06598c9fea21fea5 *html/FilterConstructors.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2abc1636f295698d34613a35c355407c *html/annnotateWithControlDepth.html
b6798186bc11953b91034dd9a680dc83 *html/callGenotypes.html
37c9ed91d8947b67d6d33d754661c999 *html/callSampleSpecificVariants.html
628106c39a5063c5fc3b3ad9737b67fa *html/callVariants.html
8b8ba9dbba95bdd65f1a6e29ac9bffbf *html/callWildtype.html
a64cdb54c83b04a58287588604e72bf3 *html/concordance.html
800eb6ddb4ce8f7db6eb09b9921292f5 *html/extractCoverageForPositions.html
9f1397e95dc1a6d0cb48b32c47e3d00f *html/matchVariants.html
ebc8b0bdd9b8185bef4b1c8fd6579977 *html/pileupVariants.html
7b085ffb97348a43baa728c0adbe0bad *html/postFilterVariants.html
74db24fcf4d11e5dc121b449589d9f43 *html/qaVariants.html
bf17f98e994bf901efd46625c07a4725 *html/tallyVariants.html
4abf659278f88308dec524fdbca229b2 *html/variantGR2Vcf.html
9f61ce4917311abd59f3aa21f87bbf02 *html/vignette.html
2c4749f07b3615e481b4df89ca88d34d *unitTests/test_calculateConcordanceMatrix.R
2ff6eb94487808d81e15a164c69023f1 *unitTests/test_idVerify.R
cfc6d0f068fbd1c0cf8017e5aae89743 *unitTests/test_variantConcordance.R
a43c2278392bc452656836bbd0ceafae *vcf/header.csv
