d78e5d4bfb7b395cc500293e255d3365 *CITATION
1142fe6891b7ea091d54a752f84cde67 *DESCRIPTION
21dd2c928d17e4f743215ab035394b8d *INDEX
64b60cc63c46076ca0bb4e159cf9d2fa *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
b1b81744d0d060ea0766b122010a868d *Meta/hsearch.rds
5868debfc7def1e66d22007b70f4529a *Meta/links.rds
6781a99e65d61a9f0eaf69d603807a8a *Meta/nsInfo.rds
0fdd19cb5e5f99373feef40b5c3544e3 *Meta/package.rds
ca6e97c14060629acd74b46b37d7095a *Meta/vignette.rds
04482a221059efde1226037f94201a6f *NAMESPACE
2d932457d14fd8c7c5f1d6cff47da294 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantAnnotation
9af991892ee1937bc5cb552a2bd7a256 *R/VariantAnnotation.rdb
8cd2f515f8b316ffc213bc9145618b76 *R/VariantAnnotation.rdx
516b3343dc68d663fac6a41d21e7c915 *doc/VariantAnnotation.R
dfa5fd2cbcb069a9b6f5730136ba998d *doc/VariantAnnotation.Rnw
35faa0cca04c328615e764ff8c2cda32 *doc/VariantAnnotation.pdf
f900f6b0aef3b2cd12d04d41c3b1b206 *doc/filterVcf.R
d45aa9e2c736ae48706a388fa61770d4 *doc/filterVcf.Rnw
c6dd7a149915ffd42aae451269e4702d *doc/filterVcf.pdf
879da333b138ca5d31f64b6639487e51 *doc/index.html
46e78a67f51161387c4c13aeefe80367 *extdata/chr22.vcf.gz
540ee7e114a2c3c9f9730610940ec47f *extdata/chr22.vcf.gz.tbi
a4ca21413e322997ed17c5429e65b9ca *extdata/chr7-sub.vcf.gz
dc5c0ecc784ff39509a164f3020b72f8 *extdata/chr7-sub.vcf.gz.tbi
b325a60a320b6aebb41d41d1dafb9c6d *extdata/ex2.vcf
277341ce20f406ab09a0c23c6bd0d86f *extdata/gl_chr1.vcf
f2a805083bd71e155f977ffb49df2cd5 *extdata/h1187-10k.vcf.gz
fab30e49f0d054d462f8e1737844b204 *extdata/h1187-10k.vcf.gz.tbi
dac0f427ab59994c11859f2b09bab618 *extdata/hapmap_exome_chr22.vcf.gz
ff0775ab73d21645fa114d487e5ebcfd *extdata/hapmap_exome_chr22.vcf.gz.tbi
48852d332eb21dd639b4c6be53762357 *extdata/structural.vcf
305019f4f621ba9ecd1126c527371e18 *help/AnIndex
cf78b7c2aaa569ceaa3f5df64fbe62c9 *help/VariantAnnotation.rdb
adc4f67bf7c4c8e3f44e56884ee7150c *help/VariantAnnotation.rdx
e97d82bf660516bc325250d1e7745f9a *help/aliases.rds
0c08bf39f06ebec9842184ca96025300 *help/paths.rds
2e5ede20b05eb1ccfc298eab33ef501c *html/00Index.html
fb5165ae81feab8ffb251fb8b7587d53 *html/GLtoGP.html
048de953464a04c80f38ce7138d6cd2d *html/PROVEANDb-class.html
944712acf58d01a6f4fd9b1ca94c84dd *html/PolyPhenDb-class.html
e50ad2dc65674b6143487f47c09c95d5 *html/PolyPhenDbColumns.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
9abf4e2f7ec03cd53ce2a4b5f34721d1 *html/SIFTDb-class.html
0a329125191894280ab057eb689043ef *html/SIFTDbColumns.html
b368e15385f1a06a27316fb9a08f0246 *html/ScanVcfParam-class.html
4362bd0f94f5ee92bf783800a55c204b *html/VCF-class.html
74c075bff597386a10d0d4df8103f35e *html/VCFHeader-class.html
2d666e66877244f4eae2a7651f31b114 *html/VRanges-class.html
b561018d8726aada568e53c07c3de1a7 *html/VRangesList-class.html
60d40a684265d29e2c5f469099b7b8e0 *html/VariantType-class.html
ee3876bc3ed281fecbf1249bd603c813 *html/VcfFile-class.html
6bcc0f66d730e47f00d575041119d07f *html/defunct.html
fb0f42e004307e343ea57fb9652907e3 *html/filterVcf-methods.html
d56962fc25093539f7cc7580f391bd9e *html/genotypeToSnpMatrix-methods.html
8bb9179e86e328d37cb6d7951cb7d0df *html/getTranscriptSeqs-methods.html
1ebf1d0a8e11419bf8ec1821e392f965 *html/indexVcf-method.html
c82f032d1034412a71f8799baa77957b *html/isSNV-methods.html
8a6a546a8e0bc30963a94eb7d17630ff *html/locateVariants-methods.html
37c382f693800375afa181138f621f4c *html/predictCoding-methods.html
4de12ce82ef258d12d8aed3e83b83bad *html/probabilityToSnpMatrix.html
b7079b47f264a5f0ef5effc820cb8820 *html/readVcf-methods.html
f00c5c18d2602a83198bd169fc81e2fc *html/scanVcf-methods.html
2d709eeab79d813c590414ba011bb425 *html/seqinfo-method.html
8bea35840221277b77b312d4a6949f40 *html/snpSummary.html
dab15d49e93677c2e3fff966e0e3a30d *html/summarizeVariants-methods.html
2b304aed07459c3307486c9893ee0099 *html/writeVcf-methods.html
0bafed3f4047bc6b7ac667dc4b25c755 *libs/i386/VariantAnnotation.dll
de85b8afe13e3cba95ec48ec892321a1 *libs/x64/VariantAnnotation.dll
17f1c6f05e7a9ff7756b6efabce3f745 *scripts/test_Rplinkseq.R
b7a9592a5de31dd84a3f7e8d1e0332de *unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
9ce56b3cbbb6829d3e3236a106046da0 *unitTests/cases/VarScan_header.vcf
0c5f14796bf4eb3683ceff8e559f43d7 *unitTests/cases/banded_gvcf.vcf
0fbb3e914d7a97208d8d1eb8fcb93026 *unitTests/cases/buffer_realloc.vcf
992d76f76b4634d6ea263b873f92cbac *unitTests/cases/ex1-seq1-90.vcf
4619ce5ed3abf69b38c13f8a72ca9755 *unitTests/cases/expand.vcf
7be3dfdcd77d28fe84fdeb30ea096d58 *unitTests/cases/fewer-FORMAT-than-GENO.vcf
dfc226165c7c64d2e24a1fe952600cdd *unitTests/cases/meta_header.vcf
3d07a0b85a80b389b0ee5ba3dba11b13 *unitTests/cases/missing-FORMAT-metadata-elt.vcf
ba4c3b28d5f63740fda11e70a19eccd7 *unitTests/cases/mixedStructural.vcf
0230db3391a4a664fd5e2236fd0e5a92 *unitTests/cases/multiple_INFO_fields.vcf
752d9d47c17d8f66791ce8804d88dbf6 *unitTests/cases/negative_FORMAT_Number.vcf
39d8ae8aa155e4bac07e9215017143e7 *unitTests/cases/no_FORMAT_column.vcf
4fc8b2f12f8b054e888ce092bb5b5443 *unitTests/cases/no_GENO_row.vcf
a99d3b281abdd928c30fd147de3848a0 *unitTests/cases/no_INFO_header.vcf
0c5bd63cfafbad13a8591b4963e0d411 *unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
0b5b4448b336d5a5b56d18cf818f9712 *unitTests/test_SIFTandPolyPhen.R
d08510e74b080b9d0830a1941740ea90 *unitTests/test_ScanVcfParam-class.R
1b90c74ed4a6501299279eb018f40240 *unitTests/test_VCF-class.R
f794098e916c49a86454bb58fe55fdb1 *unitTests/test_VRanges-class.R
98f30f7a93c9bb3ea1605f693d02b569 *unitTests/test_expand-methods.R
ad687c9f6717a20333e98db69fe89286 *unitTests/test_filterVcf.R
7c00151d0528b740a94ddb9a8504898a *unitTests/test_genotypeToSnpMatrix.R
2c2205ed5a0c6d352887365ce90f025a *unitTests/test_isSNV.R
5c303ea47fa41a2fcc89f6c834c5d83e *unitTests/test_locateVariants-methods.R
b92e0e7b951b75b850b37d0204efa1f5 *unitTests/test_predictCoding-methods.R
5044be812d16c430cbc3a2451c10eba4 *unitTests/test_readVcf-methods.R
3da37df132ebdb45ec2a1385786a782e *unitTests/test_scanVcf.R
e45debe5cc9e5a797032c5ece476a74c *unitTests/test_snpSummary.R
d98bfd1bf44ccafabe740b9ae42d1208 *unitTests/test_summarizeVariants-methods.R
118c0fdfd316bc754c56babc45b3bbdf *unitTests/test_vcfFields.R
63c02835c8ecc7f75d976dff37e41444 *unitTests/test_writeVcf-methods.R
