HMMList-class {VanillaICE} | R Documentation

## Class, constructor, and methods for representing HMM results from multiple samples

### Description

Each element of the HMMList contains the genomic intervals of the HMM segmentation (GRanges-derived object), parameters from the Baum-Welch, and a `FilterParam` object.

### Usage

    ## S4 method for signature 'HMMList'
    show(object)

    ## S4 method for signature 'HMMList'
    unlist(x, recursive = TRUE, use.names = TRUE)

### Arguments

`object` | a `HMMList` object
`x` | a `HMMList` object
`recursive` | logical; currently ignored
`use.names` | logical; currently ignored

### Slots

`.Data`

  a list. Each element of the list should be a `HMM` object.

### See Also

`HMM`

### Examples

    data(snp_exp)
    fit <- hmm2(snp_exp)
    class(fit)
    identical(length(fit), ncol(snp_exp))
    unlist(fit)

[Package VanillaICE version 1.48.0 Index]