test_annotation_score_data {SMITE} | R Documentation

## A toy PvalueAnnotation

### Description

This Pvalue annotation has only scoring data filled in to use in late pipeline "SMITE" functions. It can be used to skip the loading data phase of analysis and test latter functionality.

### Usage

    data("test_annotation_score_data")

### Format

A PvalueAnnotation with the following slots

score_data

  a PvalueObject with slots corresponding to pval_data, effect_data, genes, signs_index, scores, trans, scoring_vector, and module_otuput

### Details

This is a PvalueAnnotation which has had all of the pre-scoring data removed so that it is only usefule for using functions beginning with SMITE and SMITE plotting functions.

### Value

A PvalueAnnotation with the score_data slot containing toy scores

### Examples

    data(test_annotation_score_data)
    plotDensityPval(test_annotation)
    head(extractScores(test_annotation))

[Package SMITE version 1.14.0 Index]