hg19_genes_bed {SMITE} | R Documentation

## A bed file annotating Refseq genes for the hg19 genome build

### Description

A gene anntation BED file containing columns for RefSeq name and Gene Symbol

### Usage

    data("hg19_genes_bed")

### Format

A data frame with 41633 observations on the following 6 variables.

column 1

  a character vector for chromosome

column 2

  an integer vector for start position

column 3

  an integer vector for end position

column 4

  an character vector for RefSeq gene names

column 5

  an character vector for Gene Symbol names

column 6

  an character vector for strand

### Details

A BED files taken from the table browser.

### Value

A dataframe in BED format (chromosome, start, end) with additional columns for gene name as Refseq and gene symbol and strand.

### Source

Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 2004 Jan 1;32 (Database issue):D493-6.

### References

http://genome.ucsc.edu/

### Examples

    data(hg19_genes_bed)

[Package SMITE version 1.14.0 Index]