ComputePCOR             Compute partial correlation coefficient
GeneExp                 RNA-seq data matrix from GTEx
InferTFact              Estimate TF activity score in a sample
InferTFactPRL           Estimate TF activity score in different samples
LUSCexp                 LUSC RNA-seq dataset
LUSCmeth                LUSC DNA methylation dataset
LimmaFn                 Do differential gene expression/ differential
                        DNA methylation analysis
TFeid                   Transcription factor genes annotated using
                        Entrez gene ID
VALexp                  RNA-seq data matrix from ProteinAtlas project
sepiraInfNet            Infer tissue-specific regulatory network from
                        gene expression data
sepiraRegAct            Infer TF activity from gene expression/ DNA
                        methylation profile
