80857d043e3b55271cb91476386cd4c3 *CITATION
69dd61bbb9845ed42e5d1ac0ec59eb3b *DESCRIPTION
9de12d1faf0e186d8b0cd4fd885aee44 *INDEX
e6d0b5f2f114f62c952b9fbada449455 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
71008c38d17d1649c46bb720e98e5047 *Meta/hsearch.rds
23622df59dcc54f61ee339b5ba5a1bc5 *Meta/links.rds
903e5818270cc716fd98dbe21f42c1a0 *Meta/nsInfo.rds
ccb2bdf721eb9ac5097681658335630f *Meta/package.rds
b4a80bef8f5c01c18ee43f3aa4bf0641 *Meta/vignette.rds
35a79ab38dbab6e7c79b676116a4aff8 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/Ringo
bffb77c4eb104e0c20f5473279b42380 *R/Ringo.rdb
8dede80a9fa1285114e81327e234965c *R/Ringo.rdx
089e29bd75b0820e1f9801c950320f65 *agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
5415524a104b5816a944f4971595d5ec *agilentData/arrayDescriptionAMEXP1029_part.txt
5a2434a37ee75088c3af5efcccc5240d *agilentData/mm9chr17.RData
c5eb37db0745300dbd8bb02ee3ff18e1 *agilentData/targets.txt
ac8b5e5600b8749e7c2f5bd1a84d616f *doc/Ringo.R
3839816a13a162c65bbab97c7a0986a5 *doc/Ringo.Rnw
0860edd5a9aed38d1ef639e47b607d2f *doc/Ringo.pdf
18fbaa454af6ec37d30f1798fedc3716 *doc/index.html
b8ad09fcb16b97300782f378c5505754 *exData/MOD_2003-12-05_SUZ12_1in2.ndf
93dcafa177f6105c8602c097f9b79b98 *exData/MOD_2003-12-05_SUZ12_1in2.pos
fe86e5c1cf343c486c4985a9e5a427b8 *exData/MOD_20551_PMT1_pair.txt
3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
8e164612155b94980a9cb3b9b7a148cb *exData/README.txt
f39530a6d35b8a18e8dd075205b37bd3 *exData/exampleProbeAnno.rda
b1f0e9e8dafc00780930776bfd6e9aa5 *exData/exampleX.rda
8455900bba7d71a31bbcffdbece9420e *exData/example_targets.txt
4bb3efa4b569917acddee6e3d9d5db33 *exData/reportersInexactMatchesHg18.rda
d020c2bea3ee4cc5de50e947df20e391 *exData/spottypes.txt
6ec1bba00f10d458b6a04793e3e9a231 *help/AnIndex
5f97541db5c2db82dd22f89629ced10e *help/Ringo.rdb
1724f2a4d28e6c870c17de8899e4daae *help/Ringo.rdx
5242288bba1ae734f26a0579b98c2063 *help/aliases.rds
230fa51e179530f7eb6a3d10624a5eb1 *help/paths.rds
a810bbde658e37b6b54f1aafaf1074e7 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
8ac32295aedf7c324af397467ffc2d63 *html/Ringo-internal.html
904534655497b37fa836c670aab770b3 *html/arrayImage.html
9d67414b2bb999dfd09f668c33b40156 *html/asExprSet.html
339211045d4d54d61f658e40d60143ad *html/autocorr.html
6bf5a32021b208fa538728a9311fb811 *html/cherByThreshold.html
3d4e91930dc68c219c0dbd347901d640 *html/cherClass.html
69b65a71d878f962d6d3b2f4c728a4cd *html/chipAlongChrom.html
962f3bafbbcba0b607b75ec77d457548 *html/chipAlongChromOld.html
af5658671ed436eb844e3f236af3ac81 *html/computeRunningMedians.html
a668d3446673db9f0c0fa68828fb0560 *html/compute_gc.html
80120bd1ebd65afa0c38ad9d50d96889 *html/compute_sliding_t.html
5dd4088a985995092bd0bb418018779f *html/corrPlot.html
fb18ed021053532102bc034054876935 *html/exportCherList.html
f4130e4c702068eda5aac25cd66c78ee *html/extractProbeAnno.html
4f1639d07f60a7f8e3325072187ed76f *html/features2Probes.html
ceceb0fa3957afc65d10ce69bb0f4a1e *html/findChersOnSmoothed.html
2a1add96a2e31cd0aad34838c3ae70b0 *html/ftr2xys.html
00e5c30f8f7685b7653ea979f45e2998 *html/getFeats.html
7f9f4899a80bbcde6f7b3ca951027595 *html/newCER.html
932f6bd7112d912fcc2a9d9415742cf3 *html/nimblegenNorm.html
b03c412e2d9cbf5ada9dcb482edec9bc *html/nonzero.html
573c906958d75cdadfd37fce8edbdce3 *html/plotAutocorr.html
d68a56a82cd981a4db3f204fa41ba3ac *html/plotBM.html
4624b2dc8562557dbcd94a3118e11c35 *html/plot_cher.html
9430dcf9c1f31ac014683fda9379e4f1 *html/posToProbeAnnoEnvironment.html
c2efa3643cf1fce9a0e6366fa0be2ec1 *html/preprocess.html
68038b49b512d696995d7a4c45a6544b *html/probeAnnoClass.html
b2586d65c6660478e199905ea2c499ec *html/qopS4.html
aacb399a2456549fae5a508a131692b9 *html/quantilesOverPositions.html
d8ad38bc50dee147dd89367c20d5ea26 *html/readNimblegen.html
593735b2be3c5717ce9aaf5e60c9bd5f *html/regionoverlap.html
b2174e7d76e90e7a6f761c81cfafa632 *html/relateCERs.html
484c4bdf983fa6ed750cffcf6819e90e *html/sigGOTable.html
a0fcfc5a79b649b7f0749bcb6759ff6f *html/sliding_meansd.html
10c98a9c971778f4659e1ee385a666bb *html/sliding_quantile.html
e3b7c45b53e9af0aba1fc3a231a5791a *html/twoGaussiansNull.html
3483f0304f9143520a08f24efeae3e34 *html/upperBoundNull.html
63dc4dd194b15e1b7e1f65696cb22df8 *html/validProbeAnno.html
ed915ca8f962564e303f640d2b1e4f67 *libs/i386/Ringo.dll
ae33e1e4c3300ff90291358bc4d0a773 *libs/x64/Ringo.dll
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
26ace4b02da8e5d607f0566ccadc4e6a *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
eebb5df013fcec9efeb3462c04cd9fb5 *scripts/convertSampleKeyTxt.R
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
651d61b0dda52b6e924b69196870505d *scripts/graphChers2Transcripts.R
ed1c3d0e9bff0018ccf916c22a828c28 *scripts/makeProbeAnno.R
f69c0dd79ddeb4513eb72316c1a4b791 *scripts/mapReportersWithBiostrings.R
a97db632c7fe0facd9d1db343eeebc17 *scripts/retrieveGenomicFeatureAnnotation.R
