Package: RVS
Type: Package
Title: Computes estimates of the probability of related individuals
        sharing a rare variant
Version: 1.8.0
Date: 2019-01-30
Author: Alexandre Bureau, Ingo Ruczinski, Samuel Younkin, Thomas Sherman
Maintainer: Thomas Sherman <tsherma4@jhu.edu>
Description: Rare Variant Sharing (RVS) implements tests of association
    and linkage between rare genetic variant genotypes and a dichotomous
    phenotype, e.g. a disease status, in family samples. The tests are
    based on probabilities of rare variant sharing by relatives under
    the null hypothesis of absence of linkage and association between
    the rare variants and the phenotype and apply to single variants or
    multiple variants in a region (e.g. gene-based test).
License: GPL-2
Depends: R (>= 3.5.0)
Imports: GENLIB, gRain, snpStats, kinship2, methods, stats, utils
Suggests: knitr, testthat, rmarkdown, BiocStyle, VariantAnnotation
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Encoding: UTF-8
biocViews: ImmunoOncology, Genetics, GenomeWideAssociation,
        VariantDetection, ExomeSeq, WholeGenome
Collate: 'RVgene.R' 'pedigree-methods.R' 'RVsharing.R'
        'documentation.R' 'grainNetworkHelper.R' 'monteCarloMethods.R'
        'multipleFamilyCalculations.R' 'relatedFoundersCorrection.R'
        'sharingProbabilityCalculations.R'
        'sharingProbabilityCalculationsSplitting.R'
git_url: https://git.bioconductor.org/packages/RVS
git_branch: RELEASE_3_10
git_last_commit: bcbaf2b
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: no
Packaged: 2019-10-30 04:04:58 UTC; biocbuild
Built: R 3.6.1; ; 2019-10-30 14:08:01 UTC; windows
