109db95eb1b4072ab2573ee4f23ade1b *CITATION
0763a1e3712dcceadea709d1b5724e71 *DESCRIPTION
48fd35a1dbd2ce02865d24d3071c51f4 *INDEX
36ce913c047c8cd78d7db810ad1a9c7a *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
17df591bace64c08826622cc8c5be63b *Meta/hsearch.rds
abb97632da210b3541bc47226dbd1d59 *Meta/links.rds
27384a2d9004d4056d8bb0c2f22d11f2 *Meta/nsInfo.rds
b1ef439b425f605361b1984fe10cf4ca *Meta/package.rds
f1d439598270cbd036604d32543801ae *Meta/vignette.rds
49d1d083664ad1d9722b293e2ee397d9 *NAMESPACE
df7259a15a2300b75b200810bffe7973 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/RIPSeeker
d6583c515b45c6bfa22fb57646b4ff5b *R/RIPSeeker.rdb
fb070312fdcad74201cfdbbc6cf0afa4 *R/RIPSeeker.rdx
61951fe5d2ad133d3316e7e15d418f32 *doc/RIPSeeker.R
c782956ce9cd907ba4c4cc5d8830e930 *doc/RIPSeeker.Rnw
26e7824b8600cb8cb84edbfafeeffdef *doc/RIPSeeker.pdf
7c6476d9948a7587e22e1c0c03f6bdd7 *doc/index.html
08bb4ffc1327175d17a9a8ee80ad5b29 *extdata/PRC2/SRR039210_processed_tophat/accepted_hits_noDup_sel_chrX.bam
f35733b0cf6b993aff491129f38ad123 *extdata/PRC2/SRR039211_processed_tophat/accepted_hits_noDup_sel_chrX.bam
2e30a92bc78458afcd3fee079c0da8fb *extdata/PRC2/SRR039214_processed_tophat/accepted_hits_noDup_sel_chrX.bam
67cd63da07d23897f58d794cca23dca5 *extdata/RIPregions/RIPregion_biorep1.gff3
bd9f4a81b7b3b6aac36c49083039e594 *extdata/RIPregions/RIPregion_biorep2.gff3
7df758adaaf5b6d487ac22e4dba6c31e *extdata/pairedend/ex1.bam
3c124ff06331bf53dc2222d882769f50 *help/AnIndex
26fda8bd34064b2fe7473febfe8f0db9 *help/RIPSeeker.rdb
9c5e0da3e442f80506fc9d961391ec5b *help/RIPSeeker.rdx
3c5053d755d2bdb71d8d1835f0a9056c *help/aliases.rds
46c800821ea79eed72e1395471f1905e *help/paths.rds
31dd4418feab87c9e1e982a734b76735 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
cce907d7401ddbaebd1e9d6634a19967 *html/RIPSeeker-package.html
24774990a8576aaef89fd20b437ab2fd *html/addDummyProb.html
b2df37b5e470f2c983117bbea650ca9c *html/addPseudoAlignment.html
074e335f0b0f763db06bf1b37ad816c7 *html/annotateRIP.html
4cb53115de9a3d9b529d57209ed75b22 *html/binCount.html
d2e8be897c53e320d9c6ed6dd98d15b0 *html/combineAlignGals.html
af88c20070abec08bbd38fc9d1f24a9a *html/combineRIP.html
fdd48c617e59c4e40d6322d686827cd6 *html/computeLogOdd.html
e5369b0492be9c2427b36827dcc797c4 *html/computeRPKM.html
024b199f932c1dac918d7b771e831e8e *html/disambiguateMultihits.html
096859e31cde8b3c2c8c4f2a843fe411 *html/empiricalFDR.html
51646a4fe71ab2319a6a2526f890bf22 *html/evalBinSize.html
a813d14769bdc379ff0fabfd907939d5 *html/exportGRanges.html
3d172c0f9aab72fa60be6590b6ee6e28 *html/galp2gal.html
7efda928ae3e98eea28e8ca94716ff51 *html/getAlignGal.html
2c0025784386ab12d6f490ec5c75d811 *html/logScoreWithControl.html
f903496c2dda5bdc128bf9ee1c97c571 *html/logScoreWithoutControl.html
440e18245912a18d408078a681ddc95d *html/mainSeek.html
6b9f6ba5efe8b5bb120c58a463d6c47c *html/mainSeekSingleChrom.html
07262522113ae9c7cb285f5c99cf8fcb *html/nbh.GRanges.html
c321c685a78b11b116ab226c6780f8d1 *html/nbh.html
a6f45c0058e95109133f92220031e64c *html/nbh.integer.html
d0f96e3f1616a1c9a841796590c4e645 *html/nbh_chk.html
8158460256a9efcb9a95fe17369c69e4 *html/nbh_em.html
5039da49c7388aee6e8e1ae1b1b5bc31 *html/nbh_gen.html
4a1feb62cea309b1a841fd5d74d40d7e *html/nbh_init.html
306991cdd103ce01fe64c0c04e175739 *html/nbh_vit.html
72f22f1d0924dbe7763f3ede9d394842 *html/nbm_chk.html
0506f9f96db433fb14794c0049abe84a *html/nbm_em.html
ff7cfc280c4ddd851f5af018c6c7512f *html/plotCoverage.html
4a64fcd46429e98b0d90bfbb6324ca1c *html/plotStrandedCoverage.html
934456d33e8e84b75ac1e36b280d372c *html/randindx.html
0d0ac2a52c60d360ee5e96a9bfa55545 *html/ripSeek.html
bf321385964af672b36d89018c5f4bed *html/rulebaseRIPSeek.html
ce17c05404ee7a731f37baa1a2f2ff4f *html/scoreMergedBins.html
03061ef22504bb3c5ec7e0487ef3444c *html/seekRIP.html
8e9e9ad67332f38e7db2b1c27e30520a *html/selectBinSize.html
be282dabc20db9730e3618abd8515f67 *html/statdis.html
115c8bd378d8d2e4315b57cdeb9b4956 *html/viewRIP.html
