al
Albertson
AnnotateDataFrame
AnnotatedDataFrame
Anscombe
applyFilters
bam
BAM
bamfiles
bigWig
bigWigAverageOverBed
binReadCounts
binSize
bp
BSgenome
BWA
calculateBlacklist
callBins
cghCall
CGHcall
cghRaw
CGHregions
cghSeg
cgi
chrM
chrMT
chunkSize
copynumber
correctBins
createBins
de
DG
DNAcopy
edu
Eijk
ENCODE's
estimateCorrection
et
exe
FASTQ
gc
GC
gemlibrary
GEnomic
getBinAnnotations
getOption
glioma
hemizygous
hg
hgdownload
hgFileUi
homozygous
HPC
Hsapiens
https
igv
IGV
internationalgenome
JC
kbp
labelDescription
LGG
loess
Loess
LOESS
mappabilities
mappability
Meijer
mer
ncpus
Ns
nt
nucleotides
Olshen
parallelize
parallelizes
Pinkel
PMC
pre
QDNAseqCopyNumbers
QDNAseqReadCounts
Reijneveld
rowNames
Rustenburg
samplesize
SDs
sdundo
SEG
segmentBins
seqnames
smoothBy
soe
sourceforge
Thuijl
tsv
ucsc
UCSC
un
uncharacterized
unmapped
varLabels
varMetadata
VCF
Wesseling
wgEncodeCrgMapabilityAlign
wgEncodeDacMapabilityConsensusExcludable
wgEncodeDukeMapabilityRegionsExcludable
wgEncodeMapability
Wiel
www
xmin
Ylstra
