R: Visualize Longitudinal Feature

visualizeFeature {OmicsLonDA}

R Documentation

Visualize Longitudinal Feature

Description

Visualize Longitudinal Feature

Usage

visualizeFeature(se_object = NULL, text = "featureName",
  unit = "days", ylabel = "Normalized Count", col = c("blue",
  "firebrick"), prefix = "Test")

Arguments

`se_object`	SummarizedExperiment object contains omics count/level matrix and metadata
`text`	feature name
`unit`	time interval unit
`ylabel`	text to be shown on the y-axis of all generated figures (default: "Normalized Count")
`col`	two color to be used for the two groups (eg., c("red", "blue")).
`prefix`	prefix to be used to create directory for the analysis results

Value

null

References

Ahmed Metwally (ametwall@stanford.edu)

Examples

library(SummarizedExperiment)
data("omicslonda_data_example")
omicslonda_se_object_adjusted = adjustBaseline(
                 se_object = omicslonda_data_example$omicslonda_se_object)
omicslonda_test_object = omicslonda_se_object_adjusted[1,]
visualizeFeature(se_object = omicslonda_test_object, text = "Feature_1",
                 unit = "days", ylabel = "Normalized Count", 
                 col = c("blue", "firebrick"), prefix = tempfile())

[Package OmicsLonDA version 1.2.2 Index]