visualizeArea {OmicsLonDA}R Documentation

Visualize significant time interval

Description

Visualize significant time interval

Usage

visualizeArea(omicslonda_object = NULL, fit.method = "ssgaussian",
  text = "FeatureName", unit = "days", ylabel = "Normalized Count",
  col = c("blue", "firebrick"), prefix = "Test")

Arguments

omicslonda_object

The returned object from omicslonda analysis

fit.method

Fitting method (ssgaussian)

text

Feature name

unit

time unit used in the Time vector (hours, days, weeks, months, etc.)

ylabel

text to be shown on the y-axis of all generated figures (default: "Normalized Count")

col

two color to be used for the two groups (eg., c("red", "blue")).

prefix

prefix to be used to create directory for the analysis results

Value

null

References

Ahmed Metwally (ametwall@stanford.edu)

Examples

library(SummarizedExperiment)
data(omicslonda_data_example)
visualizeArea(omicslonda_object = omicslonda_data_example$omicslonda_results, 
                 fit.method = "ssgaussian",
                 text = "Feature_1", unit = "days", 
                 ylabel = "Normalized Count", col =
                 c("blue", "firebrick"), prefix = tempfile())
[Package OmicsLonDA version 1.2.2 Index]