validSeqlevels {ORFik}R Documentation

Helper function to find overlaping seqlevels

Description

Useful to avoid warnings in bioC

Usage

validSeqlevels(grl, reads)

Arguments

grl

a GRangesList or GRanges object

reads

a GRanges or GAlignment object

Value

a character vector of valid seqlevels

See Also

Other validity: checkRFP(), checkRNA(), is.ORF(), is.gr_or_grl(), is.grl(), validGRL()

[Package ORFik version 1.6.9 Index]