save.experiment {ORFik}R Documentation

Save experiment to disc

Description

Save experiment to disc

Usage

save.experiment(df, file)

Arguments

df

an ORFik experiment

file

name of file to save df as

Value

NULL (experiment save only)

See Also

Other ORFik_experiment: bamVarName(), create.experiment(), experiment-class, libraryTypes(), outputLibs(), read.experiment(), validateExperiments()

Examples

# 1. Pick directory
dir <- system.file("extdata", "", package = "ORFik")
# 2. Pick an experiment name
exper <- "ORFik"
# 3. Pick .gff/.gtf location
txdb <- system.file("extdata", "annotations.gtf", package = "ORFik")
template <- create.experiment(dir = dir, exper, txdb = txdb,
                              viewTemplate = FALSE)
template$X5[6] <- "heart" # <- fix non unique row
# read experiment
df <- read.experiment(template)
# Save with: save.experiment(df, file = "path/to/save/experiment.csv")
[Package ORFik version 1.6.9 Index]