| loadRegions {ORFik} | R Documentation |
By default loads all parts to .GlobalEnv (global environemnt) Useful to not spend time on finding the functions to load regions.
loadRegions(
txdb,
parts = c("mrna", "leaders", "cds", "trailers"),
extension = "",
envir = .GlobalEnv
)
txdb |
a TxDb file, a path to one of: (.gtf ,.gff, .gff2, .gff2, .db or .sqlite) or an ORFik experiment |
parts |
the transcript parts you want |
extension |
What to add on the name after leader, like: B -> leadersB |
envir |
Which environment to save to, default (.GlobalEnv) |
NULL (regions set by envir assignment)
# Load all mrna regions to Global environment
gtf <- system.file("extdata", "annotations.gtf", package = "ORFik")
loadRegions(gtf, parts = c("mrna", "leaders", "cds", "trailers"))