findFa {ORFik}R Documentation

Convenience wrapper for Rsamtools FaFile

Description

Get fasta file object, to find sequences in file.

Usage

findFa(faFile)

Arguments

faFile

FaFile, BSgenome, fasta/index file path or an ORFik experiment. This file used to find the transcript sequences

Value

a FaFile or BSgenome

See Also

Other utils: bedToGR(), convertToOneBasedRanges(), fimport(), fread.bed(), optimizeReads(), readBam(), readWig()

[Package ORFik version 1.6.9 Index]