| assignLastExonsStopSite {ORFik} | R Documentation |
Per group in GRangesList, assign the most upstream site.
assignLastExonsStopSite(grl, newStops)
grl |
a |
newStops |
an integer vector of same length as grl, with new start values (absolute coordinates, not relative) |
make sure your grl is sorted, since stop of "-" strand objects should be the min start in group, use ORFik:::sortPerGroup(grl) to get sorted grl.
the same GRangesList with new stop sites
Other GRanges:
assignFirstExonsStartSite(),
downstreamFromPerGroup(),
downstreamOfPerGroup(),
upstreamFromPerGroup(),
upstreamOfPerGroup()