addNewTSSOnLeaders {ORFik} | R Documentation

## Add cage max peaks as new transcript start sites for each 5' leader (*) strands are not supported, since direction must be known.

### Description

Add cage max peaks as new transcript start sites for each 5' leader (*) strands are not supported, since direction must be known.

### Usage

    addNewTSSOnLeaders(fiveUTRs, maxPeakPosition, removeUnused, cageMcol)

### Arguments

`fiveUTRs` | (GRangesList) The 5' leaders or full transcript sequences
`maxPeakPosition` | The max peak for each 5' leader found by cage
`removeUnused` | logical (FALSE), if False: (standard is to set them to original annotation), If TRUE: remove leaders that did not have any cage support.
`cageMcol` | a logical (FALSE), if TRUE, add a meta column to the returned object with the raw CAGE counts in support for new TSS.

### Value

a GRanges object of first exons

[Package ORFik version 1.6.9 Index]