QCplots {ORFik} | R Documentation

## Correlation and coverage plots for ORFikQC

### Description

Correlation plots default to mRNA covering reads. Meta plots defaults to leader, cds, trailer.

### Usage

    QCplots(
      df,
      region = "mrna",
      stats_folder = paste0(dirname(df$filepath[1]), "/QC_STATS/")
    )

### Arguments

`df` | an ORFik `experiment`
`region` | a character (default: mrna), make raw count matrices of whole mrnas or one of (leaders, cds, trailers)
`stats_folder` | directory to save

### Details

Output will be stored in same folder as the libraries in df.

### Value

NULL (objects stored to disc)

[Package ORFik version 1.6.9 Index]