loadTranscriptType {ORFik} | R Documentation

## Load transcripts of given biotype

### Description

Like rRNA, snoRNA etc. NOTE: Only works on gtf/gff, not .db object for now. Also note that these anotations are not perfect, some rRNA annotations only contain 5S rRNA etc. If your gtf does not contain evertyhing you need, use a resource like repeatmasker and download a gtf: https://genome.ucsc.edu/cgi-bin/hgTables

### Usage

    loadTranscriptType(path, part = "rRNA", tx = NULL)

### Arguments

`path` | path to gtf/gff
`part` | a character, default rRNA. Can also be: snoRNA, tRNA etc. As long as that biotype is defined in the gtf.
`tx` | a GRangesList of transcripts (Optional, default NULL), add to save run time.

### Value

a GRangesList of transcript of that type

### References

doi: 10.1002/0471250953.bi0410s25

[Package ORFik version 1.6.9 Index]