transcriptWindowPer {ORFik} | R Documentation

## Helper function for transcriptWindow

### Description

Make 100 bases size meta window for one library in experiment

### Usage

    transcriptWindowPer(
      leaders,
      cds,
      trailers,
      df,
      outdir = NULL,
      scores = c("sum", "zscore"),
      reads,
      returnCoverage = FALSE,
      windowSize = 100
    )

### Arguments

`leaders` | a `GRangesList` of leaders (5' UTRs)
`cds` | a `GRangesList` of coding sequences
`trailers` | a `GRangesList` of trailers (3' UTRs)
`df` | an ORFik `experiment`
`outdir` | directory to save to (default: NULL, no saving)
`scores` | scoring function (default: c("sum", "zscore")), see ?coverageScorings for possible scores.
`reads` | a GRanges / GAligment object of reads
`returnCoverage` | return data.table with coverage (default: FALSE)
`windowSize` | size of binned windows, default: 100

### Details

Gives you binned meta coverage plots, either saved seperatly or all in one.

### Value

NULL, or ggplot object if returnPlot is TRUE

[Package ORFik version 1.6.9 Index]