Filter the genomic intervals for denovo copy number states

Description

This function filters the genomic intervals for denovo events.

Usage

denovoHemizygous(object, filters = FilterParamMD(state = "221"))

denovoHomozygous(object, filters = FilterParamMD(state = "220"))

denovo(object, filters = FilterParamMD(state = c("220", "221", "224")))

denovoDuplication(object, filters = FilterParamMD(state = "224"))

## S4 method for signature 'MinDistPosterior'
denovoHemizygous(object,
  filters = FilterParamMD(state = "221"))

## S4 method for signature 'MinDistPosterior'
denovoHomozygous(object,
  filters = FilterParamMD(state = "220"))

## S4 method for signature 'MinDistPosterior'
denovoDuplication(object,
  filters = FilterParamMD(state = "224"))

## S4 method for signature 'MinDistPosterior'
denovo(object, filters = FilterParamMD(state
  = c("220", "221", "224")))

Arguments

Details

The function denovo filters genomic intervals for states '220', '221', and '224', corresponding to denovo homozygous deletion, denovo hemizygous deletion, and denovo duplication, respectively.

denovoHemizygous filters genomic intervals for state '221'.

denovoHomozygous filters genomic intervals for state '220'

See Also

FilterParamMD-class