a71c4d6858cce51217a4f7be92e4b4b6 *DESCRIPTION
42494dc80aa272aaaca6a496cea4d067 *INDEX
edd33930b1d5fde1a4241d19f83db40c *Meta/Rd.rds
e08774425f5d6819292f44e9191cedd3 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
a0fa343741f1c42f80625af5fc9a1d46 *Meta/hsearch.rds
899fa0614528f01c192a6deddaa3dd8c *Meta/links.rds
e65edd1f2b207eb1069fbf39e11a2231 *Meta/nsInfo.rds
2b175a7d56b3a0d31b46b6980d81138f *Meta/package.rds
d3655b1b467766a37b20559ffccd255f *Meta/vignette.rds
cdcb42b04205359c7a4e7c9b1b1aa622 *NAMESPACE
64850b61b619186ba39a356d074c88f6 *NEWS
e1f4dde66e67d1b13d90354b38dcbefd *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/MinimumDistance
e7092410e5e157a9d0138f84ec3357e6 *R/MinimumDistance.rdb
172f4815300bed2d0ab59d03fcd4436d *R/MinimumDistance.rdx
0e57e8c0ac03566174a91534cd0fff56 *data/md_exp.rda
d1eb803d6c58ff8f8174f739ad7a3699 *data/md_gr.rda
8a3e3917ec140296abace15fe80a7154 *data/trioSetListExample.rda
0163422786483a5396045cd6ddf930f2 *doc/MinimumDistance.R
f81c1183bb9c95f3c3fd1f34b314d679 *doc/MinimumDistance.Rnw
752343dc79e995ebd87582fa4559e31f *doc/MinimumDistance.pdf
495dce7ecfea26efbcd55f37b50ad9b3 *doc/index.html
e03ea25b8db06926dae3d1aafebd9c33 *extdata/F.txt
efc08f8a945c313599533f15913a337c *extdata/M.txt
95db2e3447bae89e33de8a32f7c27b22 *extdata/O.txt
85bbbd3aa787fd480ae50bb2ffcd8090 *extdata/O1.txt
54e6869d2875b8cd3642e6d6fc185860 *extdata/baf.rda
ffd852d6ef47afc2784d7424175a813b *extdata/exampleFiles.R
002e045dee6803f685d493dcf6940913 *extdata/logRratio.rda
1f4fa7c977cf5e93d1c7a01856de7339 *extdata/md_granges.rds
52ee010584bb394d03f0a8eea59b735a *extdata/mdgr.rds
af6d332ea2ddb50e64beefa03b484777 *extdata/pedigreeInfo.rda
8bb642a23b584fcbaf5fb2f7b7e1bd01 *extdata/pennCNV_MendelianProb.rda
52c879d772258c1e361cf27fc7aeff24 *extdata/sample.sheet.rda
26714615fc7a01e7c93b8d8035ea3f27 *extdata/trioSet12023chr12.rda
8950419414894a06ccf75fed280c1aee *help/AnIndex
1084611df6a1a9ab5b3c4634d290e2d0 *help/MinimumDistance.rdb
b5778e9edb5532fcc4cfb308b22673ad *help/MinimumDistance.rdx
82b116878d578df4c2db8ba4b0d83835 *help/aliases.rds
d3127664eb9245188691000987fafabc *help/paths.rds
04aed9ec9d9e503744a4327a1713210e *html/00Index.html
7cec151e3e5033abbed53340e2f2a79d *html/DNAcopyParam.html
a53d70d5f56112ddeb5775e117d20b85 *html/Defunct.html
97e4b728b1390214759847ef20040e05 *html/Deprecated.html
84b8290b2959f3e58aeae2b1741b2cd6 *html/FilterParamMD-class.html
3420e55188bf8a0ad77fa99954b26094 *html/FilterParamMD.html
fef58a174ab3f1d032759216380df59b *html/MAP.html
163ed81153409dadd1c5a7549d6c8576 *html/MAP2.html
3b1a0bbab9c330ed61d1039bf1f6e7cf *html/MDRanges-class.html
dfbd35cbac0ab48a67d706206b3b544f *html/MinDistExperiment-class.html
f71d895f9f5cd8d49f525f6394d5fc13 *html/MinDistExperiment.html
f36e670b07199e382163bd8743a41e81 *html/MinDistGRanges-class.html
77fca90a0cf61fe4004167c94824ec7c *html/MinDistGRanges.html
3c8e61ebdcc229f6136ad3dffae046fb *html/MinDistParam-class.html
da8d295bef6f6317513d065688d37400 *html/MinDistParam.html
ef5ab346bf2f8189642d86017097eee1 *html/MinDistPosterior-class.html
cc08c0dceea322ada23b7c7ead29428a *html/MinimumDistance.html
4446e218d6fe8ae4ba5fdba7a058935e *html/ParentOffspring-class.html
6c6429abc10e63dd8949fe5974a152b7 *html/ParentOffspringList-class.html
351f8b546156fda35e5d9a3a857f0228 *html/Pedigree-class.html
1253f737511a68d6e41e83f9c76b82bb *html/Pedigree.html
02fa58a339d4d4f224b4c790995a4c7b *html/PennParam.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
5b4ce8e9d3a7db3cef512bee9c9ad972 *html/TrioSet-class.html
fbba7a48a593030c354c243b060ec4bd *html/TrioSet.html
1baa62da0f09610578e4b324def32c4e *html/TrioSetList-class.html
3806bfd41f988d9cc7bac11f8ba68941 *html/TrioSetList.html
c9b88602bf8fbb78c759f258b2bd9927 *html/TrioSetListLD.html
9f2b78d7333f8b0c33d936550134864c *html/acf2.html
d0b39b5249b92da88051ef25b7943b18 *html/calculateMindist.html
3c6aabb85e63baa4984b8e6cecb5a17f *html/coercion-methods.html
53d0a0d4974578b7e14aced20fc0047f *html/denovo.html
f264a2953a6f9446c840748475be327b *html/exampleTrioSetList.html
afcef805a4b1b5eaecc6388f1bcf0efe *html/filterExperiment.html
308593d48fe2ca9e32efe6ebb9e28114 *html/mad2.html
a834f8bac76bdc9f815818d8d5f60fb1 *html/mdLegend.html
5e6904630d15aa60e9f04a67c444809b *html/md_exp.html
3e6aea21ab59110591b282961c5759dd *html/md_gr.html
84a994110c6b4ba9d46ca90827342e37 *html/mindist.html
4cd968b6a3d3a36871fc31a887335f5f *html/nMAD.html
20f55db628d43e4a5626087f5054701e *html/pedigreeGrid.html
154a18b534582f9d64e1c63e4c2a316d *html/pedigreeName.html
a8b5bbdd4c7a01d70a01f5332558a06a *html/pedigreeViewports.html
e4b3b5ed57b7898dbe3fc7890effdd8e *html/plotDenovo.html
4f28f0262ac42ce2f254fff3935773e3 *html/range-ILimit-method.html
fa790536637688b1ec54670e38011993 *html/segment2.html
8b1703686f0ca0a0e7b3e9e9ff381eaa *scripts/Affy2.R
15ff3c916756840de8888648ce5db0ed *scripts/Discordance.Rnw
de1aeda81e8c8ab6ded25df5ae2dbfab *scripts/Sweave.sty
a099ccea8ee43f05d160bcd257bb7afd *scripts/affy.R
3f33c8b63c426893a035c8f308a28ff5 *scripts/cleft_notParallel.Rnw
7e24f8634a31c17e346eb2286684ad37 *scripts/logR.baf.rda
ba7dfa59e03a85041de313b351b0f3c7 *scripts/runDiscordance.R
e1af4b14d6f30a4e4e0d1c044f671c51 *unitTests/Makefile
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_FilterParam.R
77e62a5014e356ab9d18448b2c0b384d *unitTests/test_MinDistExperiment.R
f1475ea1d62c4ffd452d99f92cd8350b *unitTests/test_Pedigree-class.R
781a05f56baa5e0dd8ec83790c5df78a *unitTests/test_PedigreeViews.R
77dfc64a92be3f977d0c916f43b20229 *unitTests/test_SnpArrayExperiment.R
e06a2b41fe11be4b705479117744ee1f *unitTests/test_TrioSetList.R
dc3c4b8f7bb58771e718df5fdc795973 *unitTests/test_calculateMindist.R
4540f66b68b46c13b9b426fe03cd204e *unitTests/test_callDenovoSegments.R
4587128861c0c33e9b8214229b5235a2 *unitTests/test_few_markers.R
c3e51589426259ed53a1a0441688468b *unitTests/test_posteriorCalls.R
f5434d8f5bb250791776114ce8fdb246 *unitTests/test_quads.R
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_rdsViews.R
2d2179773cc4e441499d731ccba69f3c *unitTests/test_splitsForCBS.R
