IncorporateDepmap {MAGeCKFlute} | R Documentation

## Incorporate Depmap screen into analysis

### Description

Incorporate Depmap screen into analysis

### Usage

    IncorporateDepmap(dd, symbol = "id", cell_lines = NA,
      lineages = "All", na.rm = FALSE)

### Arguments

`dd` | A data frame.
`symbol` | A character, specifying the column name of gene symbols in the data frame.
`cell_lines` | A character vector, specifying the cell lines in Depmap to be considered.
`lineages` | A character vector, specifying the lineages in Depmap to be considered.
`na.rm` | Boolean, indicating whether removing NAs from the results.

### Value

A data frame with Depmap column attached.

### Author(s)

Wubing Zhang

### Examples

    dd.rra = ReadRRA(rra.gene_summary)
    ## Not run:
      dd.rra = IncorporateDepmap(dd.rra, cell_lines=rownames(depmap_similarity)[1:3])
      head(dd.rra)

    ## End(Not run)

[Package MAGeCKFlute version 1.6.5 Index]