ConsistencyView {MAGeCKFlute} | R Documentation

## Visualize the estimate cell cycle compared to control.

### Description

Estimate cell cycle time in different samples by linear fitting of beta scores.

### Usage

    ConsistencyView(beta, ctrlname, treatname, main = NULL,
      filename = NULL, width = 5, height = 4, ...)

### Arguments

`beta` | Data frame, which has columns of `ctrlname` and other samples.
`ctrlname` | A character, specifying the names of control samples.
`treatname` | A character, specifying the name of treatment samples.
`main` | As in 'plot'.
`filename` | Figure file name to create on disk. Default filename="NULL", which means no output.
`width` | As in ggsave.
`height` | As in ggsave.
`...` | Other available parameters in ggsave.

### Value

An object created by `ggplot`, which can be assigned and further customized.

### Author(s)

Wubing Zhang

### Examples

    data(mle.gene_summary)
    # Read beta score from gene summary table in MAGeCK MLE results
    dd = ReadBeta(mle.gene_summary)
    ConsistencyView(dd, ctrlname = "dmso", treatname = "plx")

[Package MAGeCKFlute version 1.6.5 Index]