hclustView {MAGeCKFlute} | R Documentation

## Cluster and view cluster tree

### Description

Cluster and view cluster tree

### Usage

    hclustView(d, method = "average", label_cols = NULL, bar_cols = NULL,
      main = NA, xlab = NA, horiz = TRUE, ...)

### Arguments

`d` | A dissimilarity structure as produced by dist.
`method` | The agglomeration method to be used. This should be (an unambiguous abbreviation of) one of "ward.D", "ward.D2", "single", "complete", "average" (= UPGMA), "mcquitty" (= WPGMA), "median" (= WPGMC) or "centroid" (= UPGMC).
`label_cols` | A vector to be used as label's colors for the dendrogram.
`bar_cols` | Either a vector or a matrix, which will be plotted as a colored bar.
`main` | As in 'plot'.
`xlab` | As in 'plot'.
`horiz` | Logical indicating if the dendrogram should be drawn horizontally or not.
`...` | Arguments to be passed to methods, such as graphical parameters (see par).

### Value

Plot figure on open device.

### Author(s)

Wubing Zhang

### Examples

    label_cols = rownames(USArrests)
    hclustView(dist(USArrests), label_cols=label_cols, bar_cols=label_cols)

[Package MAGeCKFlute version 1.6.5 Index]