3a1e0ebad5bc3e7b6b016688f655a374 *CITATION
1e6c00f4551e2accdc8625c3f4bf24fd *DESCRIPTION
a90e72a4953a94b09f71c34533042c61 *INDEX
d591327a0c782e5e99c49f34b3575c66 *INSPEcT_GUI_sample_dataset.rds
9017937ff092f8c326900ded3515aa92 *Meta/Rd.rds
b00311ddacd7f22b303a031a712c90c3 *Meta/data.rds
989edc50dffd590a54c8c2ab86576cf9 *Meta/features.rds
0d75567d812672e68cdfe95e25732242 *Meta/hsearch.rds
7767d9ec47cca0f4c94d2d3c261ac32c *Meta/links.rds
272162322e56caa5e86d8ac1fee3b07b *Meta/nsInfo.rds
c0961af5a2c662ef74012065bceeca65 *Meta/package.rds
cb281a17f620f2bd80655bfd6ec391e6 *Meta/vignette.rds
247ad13b9bf31dce5884a18bf9850fe8 *NAMESPACE
eaeeba1671282bc58b7887d1e1dbd0da *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/INSPEcT
ac88dc0fe4d5d131dabafb2f8355922a *R/INSPEcT.rdb
e65c5e2431bbe0f3b8ac0834bd01060a *R/INSPEcT.rdx
6882bed1c98f2800612e649300241cc2 *data/allcounts.RData
d379605e795823cef756cd143d41f4af *data/datalist
125a7b58cb4c7458a6c41333128e22d3 *data/featureWidths.RData
7d0f00bd1cc91077662de158904fa16b *data/libsizes.RData
94fd669d50e50391851f74ac45c4f009 *data/matureSim2replicates.RData
dcb6d7e5beda2ed50452acf2fd546614 *data/matureSim3replicates.RData
04dbd465f5b3cda2139957bef74ce1ed *data/nascentSim2replicates.RData
f4a57d80a79abe0aad0e7d285a66ca5c *data/nascentSim3replicates.RData
a796a6f8f396ba632d0e45e9e415553e *doc/INSPEcT.R
65c5c3907bba35ee62c1c39de862b819 *doc/INSPEcT.Rmd
7433a1050f227812504b5e0870f19cf6 *doc/INSPEcT.html
d59fa90eeed492709020b675728a9e94 *doc/INSPEcT_GUI.R
151a746aba6f57dc66e15e0469508cd2 *doc/INSPEcT_GUI.html
0ea086537528218afbeacebe991709ec *doc/INSPEcT_GUI.rmd
6587a178c2408d111e9d912568fe6506 *doc/index.html
66ac71c995262c4386e490ed9ec34690 *extdata/bamRep1.bam
73dc8a7014a13a16520e377e718b5fbb *extdata/bamRep2.bam
29ca188315fe36e861e786a499a1b482 *extdata/bamRep3.bam
6da0037e8c472f33092d506371ef4627 *extdata/bamRep4.bam
e2e3d9d8b7ec59bff39bdb52719b675e *help/AnIndex
2928b57db111d0e1a3ae61c3052bce68 *help/INSPEcT.rdb
55327783d1b9e206eca778e3fdd2021c *help/INSPEcT.rdx
47c00ee729699589bc38ca450d77504b *help/aliases.rds
d2d38750c61f652fa8f684f878f678b9 *help/paths.rds
5363fa4efa73fa8872d98bdce240b54a *html/00Index.html
100b7f523222394ac3a4dae80a69fbc9 *html/AIC-INSPEcT-method.html
95c451f5b09e05bd070361f8e4778b3d *html/Extract.html
45288040d8d205e462c6195af0518dac *html/INSPEcT-class.html
6b775d627a6f7ae80ca41f08a928915f *html/INSPEcT-shinyApps.html
4eabec2fc1950367df75f854cd9b6d39 *html/INSPEcT.html
904b66de67e08af07ecdedcb9fc27e7e *html/INSPEcT_diffsteady-class.html
634c6a53718f8f8b88f9915e212c2143 *html/INSPEcT_model-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1f2d5c06048170c66f7bdb7ed5ac6e9a *html/allcounts.html
de4f6a098fef5f8aec7bae47c84ffb1d *html/calculateRatePvals.html
6cec237ee4f52c98e70d4544e1694be1 *html/chisqmodel.html
772a194c495f0a500dc5e3d88ee90683 *html/chisqtest.html
a01409c922690a47c5d8946eb24031cf *html/combine.html
4599493ce46aaf8ee4a188a7616ca967 *html/compareSteady.html
4bd78bb4682dbee7e641d4012029ff66 *html/compareSteadyNoNascent.html
2bec59ff04b737a42549e66b2d455aff *html/computeConfidenceIntervals.html
e99514e161765b1b47f11d42b6c4b66e *html/convergence.html
6dcf8d91eea246e5be370b28ec14f5b1 *html/correlationPlot.html
02ff5a607cd047936dbf064c01464643 *html/dim-INSPEcT-method.html
b2c746fcaaebfa8a68570c097b134def *html/featureNames-INSPEcT-method.html
82fb648cc7f36497c9adece45edf9e95 *html/featureWidths.html
17a220c67d83cdef2c2440380bfa858e *html/geneClass.html
01efad47652b493d67c40dea4775b85e *html/inHeatmap.html
36ee1ae701f01a448e328d907ffc5ae7 *html/inspectFromBAM.html
243642d76259d15df3329c4d359c26f6 *html/inspectFromPCR.html
13236dbb849606f4ea00a78cb06dbe90 *html/labeledSF.html
bdd0189d65f0a2987d9d3c6c9bd664ef *html/libsizes.html
932c14d8665c9645f46196ad4fc483a7 *html/logLik.html
e34e21678607ce644519061b461aa0ee *html/makeModelRates.html
df8f4897d8e76776e62bb7dfb584b398 *html/makeOscillatorySimModel.html
0bdad9b8db420916862df462aba02665 *html/makeSimDataset.html
c05478cdfeafaa885f781ffbcc61887f *html/makeSimModel.html
c4a371c12bcb1c82282115e0748f4277 *html/modelRates.html
71e28c322fdc8da30a11a9340d362814 *html/modelRatesNF.html
0bfc5268d4171ad794565d2c9298f6f4 *html/modelSelection.html
6bbf7d88f3f3a476c2f9537f5959900b *html/modelingParams.html
9fe4718cdcff1400c0b3e44d476a6126 *html/nGenes.html
b214b3cefdeeff6fb2d4349feb38d79e *html/nTpts.html
d4a7a216b6c18de34e4db6d5a73d32cb *html/newINSPEcT.html
11d4b31706b637426bef3d723c97385e *html/plotGene.html
7c6419cda489183a28c3fc4ebc6ede2e *html/plotMA.html
a1c3cf354bab489d94238cd801481050 *html/processingDelay.html
5fcad84f5e959642a472b71e3f7cb748 *html/quantifyExpressionsFromBAMs.html
94fbcb16a5a5ab9a364b053748222ff9 *html/quantifyExpressionsFromTrAbundance.html
efdfe16f72d5fef4cd8dbf37f01efc96 *html/quantifyExpressionsFromTrCounts.html
8e0b8c9808e69156122a4784cca932e8 *html/ratePvals.html
450a8eb05201586f3a978b0b5c63d101 *html/ratesFirstGuess.html
9d6af92752b577297223c3b225619d77 *html/ratesFirstGuessVar.html
d2cdd14606dbad6f7532ca29a394e318 *html/removeModel.html
e3c90a93fda48621127d2ce67e5245a6 *html/rocCurve.html
3331ed6d2427ce98d1d4bb1cfe34b57e *html/rocThresholds.html
1b74bee96995ffdefc971659df5710ae *html/setConfidenceIntervals.html
6f1d627642d232376881abc3933e8303 *html/simData3rep_Nascent.html
28b604c96697ce055fc129d944bc4003 *html/simData3rep_NoNascent.html
4b80b2a4ac0922777bdc0998b8bf1cae *html/simData4rep_Nascent.html
e5802e91e4bc41fc6f90f0fd3c1277ee *html/simData4rep_NoNascent.html
eb7aaadae75b1ee7b8e49168bfeeb80c *html/split.html
19558ac13db3aefd84f7bd0b70cae114 *html/tpts.html
3199f975b4cfdaf154949b19c1475e18 *html/viewConfidenceIntervals.html
3136cfff28b79823455a8ccfd4faf961 *html/viewModelRates.html
2c0b29b4800877dd914697fb7a7ed58d *nascentAnnTabPCR.csv
b5c6dc4404607f500bcfd07cfc0ed2c6 *nascentInspObj.rds
56541634c4aaa249b4950c958d0cffa4 *nascentInspObj10.rds
4d29c7b19a149fda608e89a513811729 *totalAnnTabPCR.csv
