readCounts {GeneStructureTools}R Documentation

Method readCounts

Description

Method readCounts

Usage

readCounts(whippetDataSet)

## S4 method for signature 'whippetDataSet'
readCounts(whippetDataSet)

Arguments

whippetDataSet

whippetDataSet generated from readWhippetDataSet()

Value

whippet read count data.frame (originally from a whippet .psi file)

See Also

Other whippet data processing: coordinates, diffSplicingResults, filterWhippetEvents, formatWhippetEvents, junctions, readWhippetDIFFfiles, readWhippetDataSet, readWhippetJNCfiles, readWhippetPSIfiles, whippetTranscriptChangeSummary

Examples

whippetFiles <- system.file("extdata","whippet/",
package = "GeneStructureTools")
wds <- readWhippetDataSet(whippetFiles)

readCounts <- readCounts(wds)
[Package GeneStructureTools version 1.6.0 Index]