UTR2UTR53 {GeneStructureTools}R Documentation

Annotate UTRs from Gencode GTF as 5' or 3'

Description

Annotate UTRs from Gencode GTF as 5' or 3'

Usage

UTR2UTR53(gtf)

Arguments

gtf

GRanges object of the GTF

Value

gtf annotation GRanges object

Author(s)

Beth Signal

See Also

Other gtf manipulation: addBroadTypes, exonsToTranscripts, filterGtfOverlap, removeDuplicateTranscripts, removeSameExon, reorderExonNumbers

Examples

gtfFile <- system.file("extdata","example_gtf.gtf",
package = "GeneStructureTools")
gtf <- rtracklayer::import(gtfFile)
gtf <- UTR2UTR53(gtf)
table(gtf$type)
[Package GeneStructureTools version 1.6.0 Index]