.all_go_similarities	dag_funcs
.ambiguous_enrichment	ambiguous_functions
.ambiguous_method_origin	ambiguous_functions
.ambiguous_scorecalc	ambiguous_functions
.ambiguous_score_rev_sort	ambiguous_functions
.ambiguous_score_sort	ambiguous_functions
.check_custom_gene	glb_checks
.check_gos	glb_checks
.check_idtype	glb_checks
.check_ifclass	glb_checks
.check_method	glb_checks
.check_ontology	glb_checks
.check_organism	glb_checks
.common_ancestors	dag_funcs
.enrichment_analysis	dot-enrichment_analysis
.entrezraw_to_entrez	dot-entrezraw_to_entrez
.ext_id_to_term_id	dot-ext_id_to_term_id
.fantom_filter_entrez	dot-fantom_filter_entrez
.find_disjunctive_lcas	dag_funcs
.generate_translation_df	dot-generate_translation_df
.get_last_common_ancestors	dag_funcs
.get_package_version	dot-get_package_version
.get_short_path_info	dag_funcs
.go_ids_lookup	dot-go_ids_lookup
.longest_path	dag_funcs
.organism_to_species_lib	dot-organism_to_species_lib
.predict_combined	ambiguous_functions
.predict_fisher	ambiguous_functions
.predict_kendall	ambiguous_functions
.predict_pearson	ambiguous_functions
.predict_sobolev	ambiguous_functions
.predict_spearman	ambiguous_functions
.prepare_score_df	dot-prepare_score_df
.prepare_score_matrix_topoicsim	dot-prepare_score_matrix_topoicsim
.prepare_variables_topoicsim	dot-prepare_variables_topoicsim
.resolve_genes_unique_gos	dot-resolve_genes_unique_gos
.resolve_keys_col	dot-resolve_keys_col
.score_combined	ambiguous_functions
.score_fisher	ambiguous_functions
.score_kendall	ambiguous_functions
.score_pearson	ambiguous_functions
.score_sobolev	ambiguous_functions
.score_spearman	ambiguous_functions
.set_edge_weight	dag_funcs
.set_identical_items	dot-set_identical_items
.set_values	dot-set_values
.term_id_to_ext_id	dot-term_id_to_ext_id
.topo_ic_sim_g1g2	dot-topo_ic_sim_g1g2
.topo_ic_sim_geneset	dot-topo_ic_sim_geneset
.topo_ic_sim_titj	dot-topo_ic_sim_titj
.unique_combos	dot-unique_combos
ambiguous_functions	ambiguous_functions
dag_funcs	dag_funcs
expression_prediction	expression_prediction
expression_semantic_scoring	expression_semantic_scoring
expset	expset
fantom_download	fantom_download
fantom_load_raw	fantom_load_raw
fantom_to_expset	fantom_to_expset
fisher_metric	geometrical_measures
geometrical_measures	geometrical_measures
glb_checks	glb_checks
id_translation_df	id_translation_df
misc_fisher	misc_functions
misc_functions	misc_functions
misc_kendall	misc_functions
misc_pearson	misc_functions
misc_sobolev	misc_functions
misc_spearman	misc_functions
set_go_data	set_go_data
sobolev_metric	geometrical_measures
topo_ic_sim_genes	topo_ic_sim_genes
topo_ic_sim_term	topo_ic_sim_term
