# Generated by roxygen2: do not edit by hand

export(expression_prediction)
export(expression_semantic_scoring)
export(fantom_download)
export(fantom_load_raw)
export(fantom_to_expset)
export(set_go_data)
export(topo_ic_sim_genes)
export(topo_ic_sim_term)
import(AnnotationDbi)
import(Biobase)
import(data.table)
import(igraph)
import(org.Hs.eg.db)
import(org.Mm.eg.db)
importFrom(AnnotationDbi,get)
importFrom(AnnotationDbi,keytypes)
importFrom(AnnotationDbi,toTable)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,annotatedDataFrameFrom)
importFrom(Biobase,assayData)
importFrom(Biobase,featureData)
importFrom(Biobase,pData)
importFrom(BiocFileCache,BiocFileCache)
importFrom(BiocFileCache,bfcnew)
importFrom(BiocFileCache,bfcquery)
importFrom(BiocFileCache,bfcrpath)
importFrom(GEOquery,gunzip)
importFrom(GO.db,GO)
importFrom(GO.db,GOBPANCESTOR)
importFrom(GO.db,GOBPCHILDREN)
importFrom(GO.db,GOBPPARENTS)
importFrom(GO.db,GOCCANCESTOR)
importFrom(GO.db,GOCCCHILDREN)
importFrom(GO.db,GOCCPARENTS)
importFrom(GO.db,GOMFANCESTOR)
importFrom(GO.db,GOMFCHILDREN)
importFrom(GO.db,GOMFPARENTS)
importFrom(GOSemSim,godata)
importFrom(Matrix,Matrix)
importFrom(RBGL,sp.between)
importFrom(data.table,as.data.table)
importFrom(data.table,fread)
importFrom(data.table,rbindlist)
importFrom(dplyr,group_by)
importFrom(dplyr,summarise)
importFrom(fastmatch,"%fin%")
importFrom(fastmatch,fmatch)
importFrom(graph,eWV)
importFrom(graph,edgeMatrix)
importFrom(graph,ftM2graphNEL)
importFrom(graph,subGraph)
importFrom(igraph,igraph.from.graphNEL)
importFrom(igraph,set.edge.attribute)
importFrom(magrittr,"%>%")
importFrom(matrixStats,colMaxs)
importFrom(matrixStats,rowMaxs)
importFrom(methods,is)
importFrom(methods,new)
importFrom(plyr,.)
importFrom(plyr,ddply)
importFrom(stats,cor)
importFrom(stats,fft)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(utils,getTxtProgressBar)
importFrom(utils,installed.packages)
importFrom(utils,packageDescription)
importFrom(utils,sessionInfo)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
