# Generated by roxygen2: do not edit by hand

export(AggregateFlowFrames)
export(BuildMST)
export(BuildSOM)
export(CountGroups)
export(FMeasure)
export(FlowSOM)
export(FlowSOMSubset)
export(GetCVs)
export(GetClusters)
export(GetFlowJoLabels)
export(GetMFIs)
export(GetMetaclusters)
export(Initialize_KWSP)
export(Initialize_PCA)
export(MetaClustering)
export(MetaclusterCVs)
export(MetaclusterMFIs)
export(NewData)
export(PlotCenters)
export(PlotClusters2D)
export(PlotGroups)
export(PlotLabels)
export(PlotMarker)
export(PlotNode)
export(PlotNumbers)
export(PlotOverview2D)
export(PlotPies)
export(PlotSD)
export(PlotStars)
export(PlotVariable)
export(Purity)
export(QueryStarPlot)
export(ReadInput)
export(SOM)
export(SaveClustersToFCS)
export(TestOutliers)
export(UpdateNodeSize)
export(get_channels)
export(get_markers)
export(metaClustering_consensus)
importFrom(BiocGenerics,colnames)
importFrom(ConsensusClusterPlus,ConsensusClusterPlus)
importFrom(CytoML,flowjo_to_gatingset)
importFrom(CytoML,open_flowjo_xml)
importFrom(RColorBrewer,brewer.pal)
importFrom(XML,xmlParse)
importFrom(XML,xmlToList)
importFrom(flowCore,'exprs<-')
importFrom(flowCore,compensate)
importFrom(flowCore,exprs)
importFrom(flowCore,keyword)
importFrom(flowCore,logicleTransform)
importFrom(flowCore,read.FCS)
importFrom(flowCore,transform)
importFrom(flowCore,transformList)
importFrom(flowCore,write.FCS)
importFrom(flowWorkspace,gh_pop_get_indices)
importFrom(flowWorkspace,gs_get_leaf_nodes)
importFrom(flowWorkspace,gs_get_pop_paths)
importFrom(igraph,'V<-')
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,add.vertex.shape)
importFrom(igraph,get.edges)
importFrom(igraph,graph.adjacency)
importFrom(igraph,igraph.shape.noclip)
importFrom(igraph,layout.kamada.kawai)
importFrom(igraph,minimum.spanning.tree)
importFrom(igraph,plot.igraph)
importFrom(igraph,shortest.paths)
importFrom(stats,prcomp)
importFrom(tsne,tsne)
importFrom(utils,capture.output)
useDynLib(FlowSOM, .registration = TRUE)
