deepblue_list_genes {DeepBlueR} | R Documentation

## list_genes

### Description

List the Genes currently available in DeepBlue.

### Usage

    deepblue_list_genes(genes = NULL, go_terms = NULL, chromosome = NULL,
      start = NULL, end = NULL, gene_model = NULL,
      user_key = deepblue_options("user_key"))

### Arguments

`genes` | - A string or a vector of string (Name(s) or ENSEMBL ID (ENSGXXXXXXXXXXX.X ) of the gene(s).)
`go_terms` | - A string or a vector of string (gene ontology terms - ID or label)
`chromosome` | - A string or a vector of string (chromosome name(s))
`start` | - A int (minimum start region)
`end` | - A int (maximum end region)
`gene_model` | - A string (the gene model)
`user_key` | - A string (users token key)

### Value

genes - A array (genes names and its content)

### See Also

Other Gene models and genes identifiers: `deepblue_count_gene_ontology_terms`, `deepblue_list_gene_models`, `deepblue_select_genes`

### Examples

    deepblue_list_genes(
      chromosome="chr20",
      start=10000000,
      end=21696620,
    gene_model='Gencode v22')

[Package DeepBlueR version 1.12.0 Index]