deepblue_input_regions {DeepBlueR} | R Documentation

## input_regions

### Description

Upload a set of genomic regions that can be accessed through a query ID. An interesting use case for this command is to upload a set of custom regions for intersecting with genomic regions in DeepBlue to specifically select regions of interest.

### Usage

    deepblue_input_regions(genome = NULL, region_set = NULL,
      user_key = deepblue_options("user_key"))

### Arguments

`genome` | - A string (the target genome)
`region_set` | - A string (Regions in CHROMOSOME START END format)
`user_key` | - A string (users token key)

### Value

id - A string (query id)

### See Also

Other Operating on the data regions: `deepblue_aggregate`, `deepblue_binning`, `deepblue_count_regions`, `deepblue_coverage`, `deepblue_distinct_column_values`, `deepblue_extend`, `deepblue_filter_regions`, `deepblue_flank`, `deepblue_get_experiments_by_query`, `deepblue_get_regions`, `deepblue_intersection`, `deepblue_merge_queries`, `deepblue_overlap`, `deepblue_query_cache`, `deepblue_query_experiment_type`, `deepblue_score_matrix`, `deepblue_select_annotations`, `deepblue_select_experiments`, `deepblue_select_regions`, `deepblue_tiling_regions`

### Examples

    regions_set = "chr1	28735	29810
    chr1	135124	135563
    chr1	327790	328229
    chr1	437151	438164
    chr1	449273	450544
    chr1	533219	534114
    chr1	544738	546649
    chr1	713984	714547
    chr1	762416	763445
    chr1	788863	789211"
    deepblue_input_regions(genome = "hg19",
        region_set = regions_set)

[Package DeepBlueR version 1.12.0 Index]