deepblue_tiling_regions {DeepBlueR} | R Documentation

## tiling_regions

### Description

Generate tiling regions across the genome chromosomes. The idea is to "bin" genomic regions systematically in order to obtain discrete regions over which one can aggregate. Using the 'score_matrix' command, these bins (tiles) can be compared directly across experiments.

### Usage

    deepblue_tiling_regions(size = NULL, genome = NULL, chromosome = NULL,
      user_key = deepblue_options("user_key"))

### Arguments

`size` | - A int (tiling size)
`genome` | - A string (the target genome)
`chromosome` | - A string or a vector of string (chromosome name(s))
`user_key` | - A string (users token key)

### Value

id - A string (query id)

### See Also

Other Operating on the data regions: `deepblue_aggregate`, `deepblue_binning`, `deepblue_count_regions`, `deepblue_coverage`, `deepblue_distinct_column_values`, `deepblue_extend`, `deepblue_filter_regions`, `deepblue_flank`, `deepblue_get_experiments_by_query`, `deepblue_get_regions`, `deepblue_input_regions`, `deepblue_intersection`, `deepblue_merge_queries`, `deepblue_overlap`, `deepblue_query_cache`, `deepblue_query_experiment_type`, `deepblue_score_matrix`, `deepblue_select_annotations`, `deepblue_select_experiments`, `deepblue_select_regions`

### Examples

    deepblue_tiling_regions(
        size = 10000,
        genome = "hg19",
        chromosome = "chr1")

[Package DeepBlueR version 1.12.0 Index]