deepblue_export_tab {DeepBlueR} | R Documentation

## Export a DeepBlue result as ordinary tab delimited file

### Description

Export a DeepBlue result as ordinary tab delimited file

### Usage

    deepblue_export_tab(result, target.directory = "./", file.name)

### Arguments

`result` | A result from a DeepBlue request such as a set of genomic regions.
`target.directory` | The directory to save the file to
`file.name` | The name of the file without suffix

### Value

return value of write.table

### Examples

    query_id = deepblue_select_experiments (
    experiment=c("GC_T14_10.CPG_methylation_calls.bs_call.GRCh38.20160531.wig"),
    chromosome="chr1", start=0, end=50000000)
    cpg_islands = deepblue_select_annotations(annotation_name="CpG Islands",
    genome="GRCh38", chromosome="chr1", start=0, end=50000000)
    overlapped = deepblue_aggregate (data_id=query_id, ranges_id=cpg_islands,
                                    column="VALUE" )
    request_id = deepblue_get_regions(query_id=overlapped,
                                    output_format=
                                         "CHROMOSOME,START,END,@AGG.MIN,@AGG.MAX,@AGG.MEAN,@AGG.VAR")
    regions = deepblue_download_request_data(request_id=request_id)
    temp_dir = tempdir()
    deepblue_export_tab(regions, target.directory = temp_dir,
                      file.name = "GC_T14_10.CpG_islands")

[Package DeepBlueR version 1.12.0 Index]