deepblue_enrich_regions_go_terms {DeepBlueR} | R Documentation

## enrich_regions_go_terms

### Description

Enrich the regions based on Gene Ontology terms.

### Usage

    deepblue_enrich_regions_go_terms(query_id = NULL, gene_model = NULL,
      user_key = deepblue_options("user_key"))

### Arguments

`query_id` | - A string (Query ID)
`gene_model` | - A string (the gene model)
`user_key` | - A string (users token key)

### Value

request_id - A string (Request ID - Use it to retrieve the result with info() and get_request_data(). The result is a list containing the GO terms that overlap with the query_id regions.)

### See Also

Other Enrich the genome regions: `deepblue_enrich_regions_fast`, `deepblue_enrich_regions_overlap`

### Examples

    data_id = deepblue_select_experiments(
        experiment_name="E002-H3K9ac.narrowPeak.bed")

    filtered_id = deepblue_filter_regions(query_id = data_id,
        field = "VALUE",
        operation = ">",
        value = "100",
        type = "number",
        user_key = "anonymous_key")

    deepblue_enrich_regions_go_terms(query_id = filtered_id,
       gene_model = "gencode v23")

[Package DeepBlueR version 1.12.0 Index]