deepblue_select_genes {DeepBlueR} | R Documentation

## select_genes

### Description

Select genes (by their name or ID) as genomic regions from the specified gene model.

### Usage

    deepblue_select_genes(genes = NULL, go_terms = NULL, gene_model = NULL,
      chromosome = NULL, start = NULL, end = NULL,
      user_key = deepblue_options("user_key"))

### Arguments

`genes` | - A string or a vector of string (Name(s) or ENSEMBL ID (ENSGXXXXXXXXXXX.X ) of the gene(s).)
`go_terms` | - A string or a vector of string (gene ontology terms - ID or label)
`gene_model` | - A string (the gene model)
`chromosome` | - A string or a vector of string (chromosome name(s))
`start` | - A int (minimum start region)
`end` | - A int (maximum end region)
`user_key` | - A string (users token key)

### Value

id - A string (query id)

### See Also

Other Gene models and genes identifiers: `deepblue_count_gene_ontology_terms`, `deepblue_list_gene_models`, `deepblue_list_genes`

### Examples

    genes_names =
        c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44')
    deepblue_select_genes(
        genes = genes_names,
        gene_model = "gencode v23")

[Package DeepBlueR version 1.12.0 Index]