2ab94a6733195eae1c19304bbdab987b *CITATION
bc3ea11cfe26fcaa648614f2b04ea58f *DESCRIPTION
c8f08dfae8335eb3a2ece78e918b6cc2 *INDEX
b585c4b7c0920d339f68b26dd3d89b55 *Meta/Rd.rds
935e13d5c2e306672d2394ba23049d7c *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
2f709074c9c4c8ac324a0de9ce1206b0 *Meta/hsearch.rds
08d0a88fb635e185753e6062bd04139e *Meta/links.rds
0f9a1a492a97d919e9d465b3fb32f6b8 *Meta/nsInfo.rds
4be78dcb9cb0025492d0a2a365fadef1 *Meta/package.rds
3c0cf304975b0adf1cd1d106634b255e *Meta/vignette.rds
2c6989a4160f54e587717dc36930757a *NAMESPACE
f7fb1775e6d42400dbc6fc8a0cd161e8 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Chicago
11c27257f284727e42f59b09268e1b1f *R/Chicago.rdb
8b8148bb8302ad67012a330248225ab7 *R/Chicago.rdx
be5c025eb1be7bfca21cf1dd10fac3fd *data/cdUnitTest.rda
8457791f37ca03b3893787812c10977c *doc/Chicago.R
91e03ffb9903f7c5da93bb38e80e90c5 *doc/Chicago.Rmd
545b6d8412013b0b7fc90fddebcc3fea *doc/Chicago.html
37492ceff9179c57c963aac08c8ae0fd *doc/index.html
bc7339c0acdef5dd9556e786cd4108c8 *extdata/unitTestChIP/featuresmESC.txt
9a3ab07f0a9d5bca66f6e69a301384e2 *extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
50a37b4afbc409ab065ff1be6c0846a9 *extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
3a0b059f32523b4c2c5c5c200a9a916d *extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
f8fe5c018ac5126ad05082f3cf235030 *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
77875efe530d66bbe85c38beb8edd4de *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
d33768e766f58986b79f1786e9727304 *extdata/unitTestData/unitTest_mESC_rep1.chinput
176bdad1ce209180fdb676818094ab67 *extdata/unitTestData/unitTest_mESC_rep2.chinput
6d658c9192a9d45438425dd25195491a *extdata/unitTestDesign/unitTest.baitmap
0093ffe703303e3a5d0b6e1a0ef6d660 *extdata/unitTestDesign/unitTest.nbpb
b4bb6de635bb1205e293c61efb750efc *extdata/unitTestDesign/unitTest.npb
60a904049b15186b76b54b9f7fcae9c4 *extdata/unitTestDesign/unitTest.poe
d27a4f83d5f8dda72f4d99ebd8aa5742 *extdata/unitTestDesign/unitTest.rmap
b70696ed8eea9b1051fa36f50518ad8b *extdata/weights/GM12878-2reps.settings
bdaefdfe9a1bc018a82fd584a1b2e182 *extdata/weights/humanMacrophage-7reps.settings
80d6c48f96a472892d2fe4d313a80930 *extdata/weights/mESC-2reps.settings
b0627d2a2129963ae7d2639ad3a67bd3 *help/AnIndex
f427a8e18c7327ea426a41ceca8863dc *help/Chicago.rdb
e1ea5a177336848db69b2dd9d5bc1d1b *help/Chicago.rdx
e5c1cd58d38542f02030897a55223139 *help/aliases.rds
03a74074a2b17a6901edcfa55de1e6c9 *help/paths.rds
e4c9004d148dd60e9029c1333c36e126 *html/00Index.html
98587909a44a04b7283111f986cfdbfc *html/Chicago-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7341fcb6d40483e5fad17eb04552162b *html/cdUnitTest.html
8de2e643025c1350c93d0e10b0f11770 *html/chicagoData.html
e96bc09387c51ee9759a22a8be0de112 *html/chicagoPipeline.html
c7fed4fc6391594c594f4fa4758db3d6 *html/copyCD.html
bf010c51e8e33855d6c9adbb81e209d7 *html/defaultSettings.html
2494b21798aa30bcb0cfa8f931ce28ae *html/estimateBrownianComponent.html
dd7abf294ca7d27d27a148f57ce36b4b *html/estimateDistFun.html
31cdd88578ac094a95193da5898f3712 *html/estimateTechnicalNoise.html
a6c6f55e653c8f4cd4d4a5200b8a85af *html/exportResults.html
e02004ffa3ada2beddf40aa6eb7c1683 *html/getPvals.html
80a7626ce8a56362b74189ad619c82c5 *html/getScores.html
6240d89cd03ae7fbfdb540cf14563897 *html/getSkOnly.html
bd78a3f6552b637e3f5c1c3c75d0e71d *html/mergeSamples.html
6936cf19e73359d0c15faca3a1f70e0e *html/modifySettings.html
e399480f1e999f71d00e8ce8b0d95d00 *html/normaliseBaits.html
138746c5eef4d15802f98546c59bbad5 *html/normaliseOtherEnds.html
4fa85efe3207f3fe5892d4c129ca432f *html/overlapFragWithFeatures.html
72922819f43c70032f1b92e4f895ad4d *html/peakEnrichment4Features.html
31850d3d1abbc09b4d38b70baffcca1c *html/plotBaits.html
b66a1f7da833e03e516919db1582132d *html/plotDistFun.html
04d0d090200d3b419d454dbf8513e60a *html/readAndMerge.html
41b525d9c52d3102aa9404f4afbac953 *html/readSample.html
9fab82b4da17a5806aa278a53b0114e3 *html/setExperiment.html
