14ad40e1359340fb460009cafd04a6e8 *DESCRIPTION
45ca093c42c763eed94e0db0b1b9d03c *INDEX
8bee83fc68ae55caded94033d6cf22cf *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
ceea6a09bfb91407e52e27b26a4d37f7 *Meta/hsearch.rds
788218dda4fa7dfbee5c0598fc1a75a9 *Meta/links.rds
2cf616e2efe67abfe27d14e63699e5ae *Meta/nsInfo.rds
ea9579f6839aedab061f982568ff089f *Meta/package.rds
81e45d6151d44efcd02fa66b6d07b66b *Meta/vignette.rds
08758e948f8fd6da2a8cf92ab036b105 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/CausalR
f2d2ec4de081c6b93044821cb6c06280 *R/CausalR.rdb
5a9e5d5f6f5616576239f054346a4dbb *R/CausalR.rdx
75a0105e9ea7befc141e045a7d1cf5f7 *doc/CausalR.R
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d0c4d2301234bafb36c5ada77a8f88da *extdata/testData.txt
5aa80e0e5bc1159c049304ee9aade184 *extdata/testData1.txt
4164dc49f6ad3051c6a1719ca775c6ac *extdata/testNetwork.sif
a3452071c00c0afea656573a57f76602 *extdata/testNetwork1.sif
4626353beff91bb0c7edc2bc3648c612 *help/AnIndex
50bb347a64e2154ca330aec1027930bd *help/CausalR.rdb
7170f347a49203f9269624cf2fd771eb *help/CausalR.rdx
27633bb478071470811baf83341da13a *help/aliases.rds
f27604edc0643e0c17e51f3bd9ee50bf *help/paths.rds
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70f51c36b82601bab1dddc6c347aba63 *html/AddWeightsToEdges.html
212697c770a4428b72ac9d28fd8781f6 *html/AnalyseExperimentalData.html
a2ade9b23862292508b6bcd4efb385e9 *html/AnalysePredictionsList.html
88a22509190aaee87d63fa4c6cf756b1 *html/CalculateEnrichmentPValue.html
4afce163518543c565cb6ca674afa07b *html/CalculateSignificance.html
4c75ba1ed7f2c3dac867c2f079401137 *html/CalculateSignificanceUsingCubicAlgorithm.html
20d6f72618c0051ab031366441d769fc *html/CalculateSignificanceUsingCubicAlgorithm1b.html
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d916d904abc9e74b1edf1c31a566077d *html/FindIdsOfConnectedNodesInSubgraph.html
553a1af5eae48fc56f68857f73d94260 *html/FindMaximumDValue.html
07675c50cc5283afc5034e1582afc5be *html/GetAllPossibleRoundingCombinations.html
0adcfd04da5efddb3e1ae176b960a1c3 *html/GetApproximateMaximumDValueFromThreeByTwoContingencyTable.html
3f79d397775b029d51df33f0a0838191 *html/GetApproximateMaximumDValueFromTwoByTwoContingencyTable.html
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8eebc36943f5ce811581d49e3e6d336b *html/GetMatrixOfCausalRelationships.html
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bb0df31f6a203784e53452bf16fb3f6b *html/GetMaxDValueForAThreeByTwoFamily.html
e7ebd2ceca73ac16db8137c29c778842 *html/GetMaximumDValueFromTwoByTwoContingencyTable.html
4e431a14bd31c8b807ce3e8de41cc4f2 *html/GetNodeID.html
4669c8d7191b421d84b01493c0046b87 *html/GetNodeName.html
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45143cee6d35474e1c753e3f32f9a00a *html/GetPathsInSifFormat.html
66c00b7e8ca08a1d708b1055a0690758 *html/GetRegulatedNodes.html
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7a5a427e910832e98354f77627bc99e3 *html/GetScoreForNumbersOfCorrectandIncorrectPredictions.html
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08a11f5b4fdcb143cb3c1dee97c455d1 *html/GetSetOfDifferentiallyExpressedGenes.html
6a4eb16751a777b7fb2698d661af064d *html/GetSetOfSignificantPredictions.html
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7d14f51d76c6005dd5a5af62d1374ec3 *html/GetWeightForNumbersOfCorrectandIncorrectPredictions.html
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e9a5d5863c54ebdaea5e7a1745dea2f0 *html/GetWeightsFromInteractionInformation.html
f9402becd6bbc4ca4e02825f71108e14 *html/MakePredictions.html
1741412fbdf2fc78ea4110928c1b90de *html/MakePredictionsFromCCG.html
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4e128ae93b62ef3580bc8d90ed73b6f7 *html/OrderHypotheses.html
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50a9c6930faa8f3c91a5502f25e69e12 *html/ReadSifFileToTable.html
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471e7e9e93c7038a09ffe46bcc1d0d4a *html/ValidateFormatOfTable.html
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a0ab331207bb8294a6cfe4d14a9b7cbd *html/runSCANR.html
34ba6c40f4d189fc99b88eea72d43077 *testData/CCGWithTwoLevels.txt
8298393b0899876e589e05349667c3a9 *testData/network_with_conflict.sif
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4b090fddaad7c4df93b2ba0e9d276956 *testData/test_ExperimentalData.txt
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ec5880a18a5dcd9adde6544197a2ed51 *unitTests/test_CubicAlgorithm.R
48331a4b2428088bc8716c280ca71c4c *unitTests/test_CubicAlgorithm1b.R
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4b090fddaad7c4df93b2ba0e9d276956 *unitTests/test_ExperimentalData.txt
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7c77c3e9fe79949ae368cd11d2ce2a71 *unitTests/test_HypothesisScorer.R
906ee2fc04f414d125db71aa0f1bc75b *unitTests/test_InputNodes.txt
022897eb86432e7f37be347b33452a38 *unitTests/test_NodeInclusionFile.txt
be16cdee1cf02a44b44505e2c1ff5efb *unitTests/test_QuarticAlgorithm.R
ecefa26f7be645f06429b17e7d248f52 *unitTests/test_RankTheHypotheses.R
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b7ef184bc3fda30c1eda36c9353258d2 *unitTests/test_SignificanceCalculator.R
202353c19c4305c7893412836c6b3875 *unitTests/test_WriteExplainedNodesToSifFile.R
f4896b64aedcde1b431e8e7452a3db8a *unitTests/test_network.sif
