R: Guess parameter panel

guessPanel {CATALYST}

R Documentation

Guess parameter panel

Helper function to parse information from the parameters slot of a flowFrame/flowSet.

guessPanel(x, ...)

## S4 method for signature 'flowFrame'
guessPanel(x)

## S4 method for signature 'flowSet'
guessPanel(x, index = 1)

`x`	a `flowFrame` or `flowSet`.
`...`	optional arguments.
`index`	numeric. If `x` is a `flowSet` object, this index specifies which `flowFrame` to extract.

a data.frame with the following columns:

name: the parameter name as extracted from the input flowFrame,
desc: the parameter description as extracted from the input flowFrame,
antigen: the targeted protein markers, and
use_channel: logical. If TRUE, the channel is expected to contain a marker and will be kept.

Mark D Robinson, and Helena Lucia Crowell helena.crowell@uzh.ch

# examplary data with Time, DNA, BC channels, etc.
data(raw_data)
guessPanel(raw_data)

[Package CATALYST version 1.10.3 Index]