c3601211730a03597553c1117232f403 *DESCRIPTION
0014e77731c11256b108bc3707cc3431 *INDEX
9b22b66086250a2693094aef3d510d6e *Meta/Rd.rds
54aaea5ccbc1f0b69c5a26b3c2840a20 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
9d98dc012a51a073c180fbc4e44c5264 *Meta/hsearch.rds
b8240a17e5375d4f8d85cdac9e8b0f49 *Meta/links.rds
16cc8d6fc0bcfbe56ad54c3726f70fbd *Meta/nsInfo.rds
416b428c5a3ed1a419f403e191c83dd5 *Meta/package.rds
45b6694da9078335224b0a5ffcb67ac2 *Meta/vignette.rds
1161b66e98216cf326c2970317775403 *NAMESPACE
3a5fbb3686117c9533c9649b898fb26c *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Biostrings
cb2e11ef1f4762c191ee9d33c9ecc10d *R/Biostrings.rdb
6b701327b950731d1f410469e0bf8f7b *R/Biostrings.rdx
fb21544885b0d8e223dc707a19f703a6 *data/BLOSUM100.rda
370ae409745a34652b50f6c0992a7c36 *data/BLOSUM45.rda
ff21fdf7ae6c26d41265485e06678c47 *data/BLOSUM50.rda
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
ec70a69370ee7b924a1521bd22a0b92a *data/BLOSUM80.rda
4bb649b15a1c70fdc6beb4ea37ca8d58 *data/HNF4alpha.rda
b85025df056de88ad4e0ec260b4fbd3e *data/PAM120.rda
d790bbcef52f77bdbac03ca4fe317a0d *data/PAM250.rda
5ab6a6fb04f2bb2011c96abdea970b87 *data/PAM30.rda
d234baa0914f6233478aa0687fdbe10c *data/PAM40.rda
8533b9535b841e231b9babd78d584885 *data/PAM70.rda
d1f902614de1a9eba90d8387690c2688 *data/phiX174Phage.rda
ea5bd4d16695006aab9061c351649bb6 *data/srPhiX174.rda
e566417a897993c19e4b81e517778b6c *data/yeastSEQCHR1.rda
3efc1f8f1ed38992daa06eebf7089093 *doc/Biostrings2Classes.R
d7f69eedb9db937ef0b727cd1d558b8d *doc/Biostrings2Classes.Rnw
35546b933df8a94303558269e79d9101 *doc/Biostrings2Classes.pdf
865d1bbb87a1c74c54539c6482016f15 *doc/BiostringsQuickOverview.Rnw
53a5574f0acddd5a52097f1f88624eae *doc/BiostringsQuickOverview.pdf
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61f53dbee2860c3e5cd6924d8e158129 *doc/MultipleAlignments.Rnw
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dd1d84bc6924d7da1e51f96a0b6c7090 *doc/PairwiseAlignments.R
a57eccb5230ff46ecc58d9694377bb55 *doc/PairwiseAlignments.Rnw
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c464dac6b998f0d563b32be23d69e3e4 *doc/index.html
2a20cd27e459126e737ef5d753ebddbe *doc/matchprobes.R
b239f15493ac1bc5ab95d1afd25a2b28 *doc/matchprobes.Rnw
70360f9aed295262024855eff1d51186 *doc/matchprobes.pdf
78e8db3ebcbc095287e6fd8ccfe0e1a2 *extdata/Phylip.txt
fce14be25eab8521b6ee474b4c36a7df *extdata/README
24604bc9ec4790d5d590a623edea5548 *extdata/Sc.fa
1a6fe1b8caec191eb16265cc5b1d7563 *extdata/Sp.fa
11861abec072717c887a753e28f05f56 *extdata/dm3_upstream2000.fa.gz
cfea9d61b851d60768c0751e17ab9937 *extdata/fastaEx.fa
c4114941da5b3499beff7b3f87c84166 *extdata/hg18chr8_gap.txt
76897b4820e1ed23b787a171ae4d3b5a *extdata/hg18chrY_gap.txt
3f5e79e34a204b72bb52b2e5d2b79f19 *extdata/msx2_mRNA.aln
23770dfd9eb85ab715b4cc28268bbc42 *extdata/s_1_sequence.txt
6210f3d073b676bc7bed60172a72c3e3 *extdata/someORF.fa
2fc0b8e9625d6ebebf8fca9cb7737ebd *extdata/someORF.fa.gz
a0baf83424f9851d18e2815aa67e4ba9 *help/AnIndex
9f7da9f21658e335ec9b59eb82e47e0c *help/Biostrings.rdb
6cda0bead9b7c17292e6fe6b0c8d801e *help/Biostrings.rdx
600396c061d364307461b8d403b33fa3 *help/aliases.rds
59642b3aff5914ffe6d21bdaea144512 *help/paths.rds
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96c8375727c745adc3b9c85e93405056 *html/AAString-class.html
40d42c75ddab559254cfde483f5681da *html/AMINO_ACID_CODE.html
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07e0c2c3aa29615f71104c18dc644aae *html/DNAString-class.html
65ef6a3974b7aa8e1281cc9fd0315df7 *html/GENETIC_CODE.html
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3587ec9837a63f041036967926ac9413 *html/IUPAC_CODE_MAP.html
f8d9ac0a9aa75661f92b1d57167c6528 *html/InDel-class.html
c41498d96075983ca2cb483efc02b120 *html/MIndex-class.html
237dea987fd600b9c761f9bfb9bbd568 *html/MaskedXString-class.html
1690d010a7274d3f7fbf58b44f197417 *html/MultipleAlignment-class.html
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e9db4e13fbd469fa113a0fb0dff88600 *html/PairwiseAlignments-io.html
15efe86b59a7ab44d2c83e1a214d6074 *html/QualityScaledXStringSet-class.html
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8d0492ed1a30b7fa846e54e16c363124 *html/XString-class.html
5febddb1f35ffd1d2e09e080a58fc5d2 *html/XStringPartialMatches-class.html
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813cae7f5213dc2e3394742e55404371 *html/XStringViews-class.html
49a307332a8c70231025c4482d65d04e *html/align-utils.html
a3d83fc0725b19d7139adab9a007e9f2 *html/chartr.html
b7fa9214671a98528a97644a9a1bd162 *html/detail.html
30f943fd609e0c0b26a774c1691788fa *html/dinucleotideFrequencyTest.html
d97847d2fc50533d7b6ad7c762f7c515 *html/findPalindromes.html
bb47e6ffb1e701af347c046a2673ff35 *html/getSeq.html
d01acb1dd5a09721af93731f65fc33a3 *html/gregexpr2.html
5242e40756b1be02e22b82e55cfe1764 *html/injectHardMask.html
808508dfba4f52627455384d376a1761 *html/letter.html
dd0ba592d65cbad5b294163938e4637c *html/letterFrequency.html
1bf6069e6a9be79298b2585e35e5ebe0 *html/longestConsecutive.html
948484348da52fee792daec87d475da6 *html/lowlevel-matching.html
7547bc983bda2e5395c45f13457318c4 *html/maskMotif.html
37871ba67756284ccb19884c02dc2542 *html/match-utils.html
40d6ca8c31cea218138315591137fe91 *html/matchLRPatterns.html
e22476a7acbb296330ca50982fc25838 *html/matchPDict-exact.html
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b4c4f9ecb98a940a600adcbd16ddf1b7 *html/matchPattern.html
36443767ed11400e8b7f397b75c03780 *html/matchProbePair.html
67d8add776ed218f2554734d06670417 *html/matchprobes.html
e37c05971baa62aa32bb5ad7338f34b5 *html/misc.html
9252a0d7c0bdf10139d4d26b50baa3aa *html/needwunsQS.html
fbf3e30ba0658c2b3979e0cdfe51701b *html/nucleotideFrequency.html
c790a8fe010b57099d05913bb4cd93dc *html/padAndClip.html
c622ca7ba493aa1f71b339bd7565c565 *html/pairwiseAlignment.html
26167a357489190e10fe8619fbabb728 *html/phiX174Phage.html
0b9f4142a41a47d9cb31ecd6bfea8c04 *html/pid.html
f6dad7b3bf9881e01bdbfd88ef92f8f7 *html/pmatchPattern.html
fa1708672f37398915527bc2e25e8680 *html/replaceAt.html
b1da38464b93066d302d006a7efd8fa7 *html/replaceLetterAt.html
f1b8a76903f3689c9dff9295388ddc2c *html/reverseComplement.html
247524af6aea1fbd13941de63b395f05 *html/stringDist.html
b699dd56acb3b5f8d10756342c8e8585 *html/substitution_matrices.html
fa42d6452fdab9f71e0a351be4e0f264 *html/toComplex.html
d390b4eba674dfaf233758f208d0d5d6 *html/translate.html
4a83c61128684da99302b3d5bf32714b *html/trimLRPatterns.html
894c5586407737dc948319cf941c1c04 *html/xscat.html
a733bf29583694461f913e162a1acf27 *html/yeastSEQCHR1.html
018adb74d849e8af2c0137070a885e7a *include/Biostrings_defines.h
85307fa7cb5fde749d8691637f311f74 *include/Biostrings_interface.h
f0863ead2abb45524e2a2074c9a8eee7 *include/_Biostrings_stubs.c
400b5874c51e0c1ab12d87f45841546d *libs/i386/Biostrings.dll
25266fa8be7f7e69628ef1fa894e326f *libs/x64/Biostrings.dll
16f044e2cdb85f2d44f501610554df57 *unitTests/test_MultipleAlignment.R
1437c2c15ae9d298a46c40bdc46455f9 *unitTests/test_XString.R
3005f58f4f937842a2813c4cb40f2c6f *unitTests/test_XStringSet.R
46c6cf375691dccb047582d39ca71bef *unitTests/test_XStringSetList.R
c6fed7d62d87e8fd0fd23f978a072ba9 *unitTests/test_findPalindromes.R
5a4fe6582d86f20f68c627d1efd511c0 *unitTests/test_matchDNAPattern.R.FIXME
0371bd65424b6b0160dd18f537333cc0 *unitTests/test_matchPDict.R
81024370010e243c14bd882b4cb9a727 *unitTests/test_pairwiseAlignment.R
407a2929d7f9fce74bd30e731a492477 *unitTests/test_twoWayAlphabetFrequency.R
