| phaseArray2phaseMatrix {AllelicImbalance} | R Documentation |
used to convert the phase from the visually friendly matrix to array.
phaseArray2phaseMatrix(x, ...) ## S4 method for signature 'array' phaseArray2phaseMatrix(x, ...)
x |
array see examples |
... |
arguments to forward to internal functions |
A more effectice way of store the phase data in the ASEset object
Jesper R. Gadin, Lasse Folkersen
#load data
data(ASEset)
a <- ASEset
#example phase matrix
p1 <- matrix(sample(c(1,0),replace=TRUE, size=nrow(a)*ncol(a)),nrow=nrow(a), ncol(a))
p2 <- matrix(sample(c(1,0),replace=TRUE, size=nrow(a)*ncol(a)),nrow=nrow(a), ncol(a))
p <- matrix(paste(p1,sample(c("|","|","/"), size=nrow(a)*ncol(a), replace=TRUE), p2, sep=""),
nrow=nrow(a), ncol(a))
ar <- phaseMatrix2Array(p)
#Convert back
mat <- phaseArray2phaseMatrix(ar)