| loadBAM {ASpli} | R Documentation |
Load BAM files into R session using a targets specification.
loadBAM(targets, cores)
targets |
A data frame containing sample, bam and experimental factors columns |
cores |
Number of processors to use |
A list of GAlignments. Each element of the list correspond to a samples BAM file.
Estefania Mancini, Marcelo Yanovsky, Ariel Chernomoretz
# Define bam files, sample names and experimental factors for targets.
bamFileNames <- c( "A_C_0.bam", "A_C_1.bam", "A_C_2.bam",
"A_D_0.bam", "A_D_1.bam", "A_D_2.bam" )
targets <- data.frame(
row.names = paste0('Sample_',c(1:6)),
bam = system.file( 'extdata', bamFileNames, package="ASpli" ),
factor1 = c( 'C','C','C','D','D','D') )
# Load reads from bam files
bams <- loadBAM( targets )