4414bbd40b48c6297d4998c49d5882f2 *DESCRIPTION
753c1f71c3d9894bd421193de634f7d5 *INDEX
4e179213999eb76acf8de73060e1ec5a *Meta/Rd.rds
ea3eb198bca103ed7feea74376e23ba8 *Meta/hsearch.rds
c603f435717f7bf700df93fa1b3f0201 *Meta/links.rds
46c2d5717578e75b7b43a78a364207be *Meta/nsInfo.rds
fc0fb32c0e2fe719bc45bae0c91ee615 *Meta/package.rds
68fd1f6b69d2aaceb70c3be225555431 *Meta/vignette.rds
39920511f64654024fbee23d83cde9ca *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/systemPipeR
2000630f05fe5a79114b69411421116c *R/systemPipeR.rdb
f49330cced178cde6292013a0067a3ff *R/systemPipeR.rdx
984ea8fb81d5731c31d3913b1663684f *doc/index.html
9724b1600d028571957bd9453e59a664 *doc/systemPipeChIPseq.Rnw
2ae9972546449024213092cfeb784277 *doc/systemPipeChIPseq.pdf
b757a35c828cc036c40582d8f28e2f1d *doc/systemPipeR.Rmd
dfd18ec9133f0ee4fa7e5db3a60bb40b *doc/systemPipeR.html
619897ea7b88598fb44974300b967325 *doc/systemPipeRNAseq.Rnw
c298bb2a9f3095a23564292fc2202404 *doc/systemPipeRNAseq.pdf
4e8dd6176c4b0965bd869fe73741a0c8 *doc/systemPipeVARseq.Rnw
e0b2293026ad934b4067735ac2491360 *doc/systemPipeVARseq.pdf
c08527c167f3a42f17564ea653dd9842 *extdata/Makefile
78dda8645d323b468922f7e483be4c9c *extdata/alignStats.xls
f11c8bb8f32228337b590ea3f00b3ea1 *extdata/annotate_peaks.param
2930ca439a416d3be1692445c4570ae2 *extdata/annotate_vars.param
3dd1314bc7adebaf6a5e5c6baf32422a *extdata/bowtiePE.param
5ab954737e604f7db27511ad75bcd8d9 *extdata/bowtieSE.param
aae4033870a0ef00a873be0b1b057f76 *extdata/bwa.param
784a3074752b394df008f0fb9e6ab9fc *extdata/countDFeByg.xls
c6911d9f8ebc54a6775821f1dc44286a *extdata/count_rangesets.param
54e3d6c10356c74053ca1924b8576e21 *extdata/filter_gatk.param
7dcf24ed0132ec529de84fd04c14b202 *extdata/filter_sambcf.param
7cccff803c025141d49159ebe402aece *extdata/filter_vartools.param
78703d16e099b08f184a7b0cae1f08a0 *extdata/gatk.param
b394006139d9d91099117f3916fc4c31 *extdata/gatk_run.sh
ee61c831d0762f41d6182fb4e2d36c8a *extdata/gsnap.param
f95f0134cbad66a16c8307056a8ab4cc *extdata/macs2.param
dca9b2f81e39bad7b57af01f094bc56e *extdata/macs2_noinput.param
9cca89e6cd2ea6e3b8a4e3037d2891e3 *extdata/rpkmDFeByg.xls
3d30cad15d64aebc718192ef099fecd5 *extdata/rsubread.param
7004f0a88e037520b4a65ddd9a85999e *extdata/rundiff.param
205f33a7c2dfc67418ec0303621a141c *extdata/sambcf.param
939b5de645b9bb23b26564c42cc90b10 *extdata/sambcf_run.sh
f538b097c9d1298b0ad2ee12081327d0 *extdata/targets.txt
c7084088a32f4beab1eede51d7bb8685 *extdata/targetsPE.txt
0286b968b47dda425f99c9efac4b094d *extdata/targetsPE_chip.txt
9e33954fb66979808b9d389cff6bdcf5 *extdata/targets_chip.txt
271e9a808cf0872c3a4012f003658498 *extdata/tophat.param
1cd9d053915ae7212759294de6db92d9 *extdata/torque.tmpl
5b96dca6a17c61b43b5db71e20b54c30 *extdata/trim.param
a3f4e242449c101af6f2c9056696d3a1 *extdata/trimPE.param
f57aa9edff5506cc819e15368b8ab9ad *extdata/vartools.param
e6a434ddae23c674ddff2901ef9651df *extdata/vignette_archive/systemPipeR.R
02d0ca4174a70ef7fb215748b3a672a1 *extdata/vignette_archive/systemPipeR.Rnw
201dbc32e8f40b8fe5b3ba5eab50e104 *extdata/vignette_archive/systemPipeR.pdf
9910b6176c584dd9542719b1a3dc29e8 *help/AnIndex
d4998a39b8dc031b6fffd85abc322740 *help/aliases.rds
19b53abb2e5443df8b86e44d6b107f42 *help/paths.rds
dcfdad9be0339bb110176f289f85eb30 *help/systemPipeR.rdb
20d61963b269c1ba4cce2de84cc98e24 *help/systemPipeR.rdx
12901a11a10f0bdad044ebe97b771f22 *html/00Index.html
0629445e5f3de06acbaf6e4013c7deca *html/R.css
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446027_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446028_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446029_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446030_1.fastq
d3a1df6db3d820a1887c92b6385f113f *unitTests/targets.txt
48bb7620b0ea30ecde2cacf14e388025 *unitTests/test_classes.R
271e9a808cf0872c3a4012f003658498 *unitTests/tophat.param
